 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Nov 20, 2007 |
| Title |
Prediction of Recurrence-Free Survival in Postoperative NSCLC Patients—a Useful Prospective Clinical Practice |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
|
| Summary |
Background:
One of the main fields of lung cancer research is identifying patients who are at high risk of post-resection recurrence. Individual recurrence risk evaluation by accurate but simple and reproducible method is needed for the clinical practice.
Results:
The log-rank test and further selection by our criteria of assayability generated 87 genes from microarray data with significant level 5%. Of these, by PTQ-PCR, the expression of most significant 18 genes was obtained. Using these gene expression information and clinical parameters, by stepwise variable selection method, the recurrence prediction model, which composed of 6 genes (CALB1, MMP7, SLC1A7, GSTA1, CCL19, IFI44) and pStage and cell differentiation, were developed. Validation into the two independent cohorts showed good results of the proposed model (p=0.0314, 0.0305, respectively). The predicted median recurrence-free survival times for each patient were reflected real ones well.
Conclusions:
Our method of individualized recurrence risk prediction is accurate, technically simple and reproducible to be used in clinical practice. Therefore, it would be useful in customizing the lung cancer management strategies.
Keywords: Recurrence Free Survival Analysis
|
| |
|
| Overall design |
Methods:
At first, we selected the statistically significant genes from the analysis of time-to-recurrence and censoring information from 138 whole-genome wide microarray data. Then, we further reduced the number of genes which could be reliably reproducible by RTQ-PCR. With these assayable genes and clinical parameters, construction of recurrence prediction model by Cox proportional hazard regression was done. After validation into two independent cohorts (n=59 and n=56), the model was transformed into recurrence prediction for the each patient.
|
| |
|
| Contributor(s) |
Son D, Kim S, Jo J, Kim H, Choi YH, Jung Y, Park M, Lim Y, Lee J, Lee E, Kim J |
| Citation(s) |
19010856 |
| |
| Submission date |
Aug 29, 2007 |
| Last update date |
Mar 25, 2019 |
| Contact name |
Jhinkook Kim |
| E-mail(s) |
callian@paran.com
|
| Phone |
82-2-3410-3753
|
| Fax |
82-2-3410-3649
|
| Organization name |
samsung medical center
|
| Street address |
50
|
| City |
seoul |
| ZIP/Postal code |
135-710 |
| Country |
South Korea |
| |
|
| Platforms (1) |
| GPL570 |
[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array |
|
| Samples (138)
|
|
| Relations |
| BioProject |
PRJNA102281 |
| Supplementary data files not provided |
| Processed data included within Sample table |
|
|
|
|
 |
Less...
More...