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Series GSE88947 Query DataSets for GSE88947
Status Public on Oct 20, 2016
Title arrayCGH from human mesenchymal stem cells (hMSC) and hMSC after adipogenic and osteogenic differentiation
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Summary hMSCs (Lonza) were differentiated towards adipocytes with three cycles of adipocyte differentiation induction and maintenance. hMSCs were differentiated towards osteocytes with osteogenic differentiation medium for 3 days and for 7 days. ArrayCGH experiments were performed before differentiation induction, after 2 and 3 cycles of adipogenic differentiation induction and after 3 days and 7 days of osteogenic differentiation induction.
 
Overall design Genomic DNA was isolated form hMSCs before differentiation induction, after 2 and 3 cycles adipogenic differentiation induced cells and from 3-day and 7-day osteogenic differentiation induced cells.
 
Contributor(s) Fischer U, Galata V
Citation(s) 29416732
Submission date Oct 19, 2016
Last update date Mar 28, 2018
Contact name Valentina Galata
Organization name Saarland University
Department Chair for Clinical Bioinformatics
Street address Campus, E2.1
City Saarbruecken
State/province Saarland
ZIP/Postal code 66123
Country Germany
 
Platforms (1)
GPL22579 Agilent-021529 SurePrint G3 Human CGH Microarray Kit, 1x1M, design ID 21529 [hg19:GRCh37:Feb2009]
Samples (5)
GSM2355706 hMSC
GSM2355707 2 cycles adipogen
GSM2355708 3 cycles adipogen
Relations
BioProject PRJNA349168

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE88947_RAW.tar 1.5 Gb (http)(custom) TAR (of TXT)
GSE88947_ave25kb_seg_merged.tsv.gz 5.8 Mb (ftp)(http) TSV
GSE88947_bc_norm_prCGH.tsv.gz 50.1 Mb (ftp)(http) TSV
Processed data are available on Series record

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