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| Status |
Public on Feb 27, 2017 |
| Title |
Comparison of transcriptomic profiles of Pseudomonas protegens H78 and its (p)ppGpp0 relA/spoT mutant |
| Organism |
Pseudomonas protegens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Transcriptomic profiles of Pseudomonas protegens H78 and its (p)ppGpp0 relA/spoT mutant, which were grown to the late exponential phase (OD600 = 5.0 to 6.0) in the KMB media at 28 °C, were assessed by deep sequencing (RNA-seq) on Illumina 2500.
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| Overall design |
Two bacterial strains, Pseudomonas protegens H78 wild type strain and its (p)ppGpp0 mutant strain, each was replicated three times.
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| Contributor(s) |
Huang X |
| Citation(s) |
32009198 |
| Submission date |
Oct 20, 2016 |
| Last update date |
Dec 21, 2020 |
| Contact name |
Xianqing Huang |
| E-mail(s) |
xqhuang66@sjtu.edu.cn
|
| Organization name |
Shanghai Jiao Tong University
|
| Department |
School of Life Sciences and Biotechnology
|
| Street address |
DongChuan RD, Minhang District
|
| City |
Shanghai |
| ZIP/Postal code |
200240 |
| Country |
China |
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| Platforms (1) |
| GPL22592 |
Illumina HiSeq 2500 (Pseudomonas protegens) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA349482 |
| SRA |
SRP091880 |
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