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Series GSE89245 Query DataSets for GSE89245
Status Public on Oct 25, 2017
Title RNAseq of wild type and maternal-zygotic Nanog mutant (MZnanog) zebrafish embryos
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary Goal of this study is differential gene expression between wild type and MZnanog mutant during early zebrafish embryogenesis
 
Overall design Three timepoints - 2 hours post fertilization (hpf), 4 hpf, and 6.5 hpf; two replicates of wild type at each time point, one replicate for MZnanog at each time point
 
Contributor(s) Gagnon JA, Schier AF
Citation(s) 29180571
Submission date Oct 27, 2016
Last update date May 15, 2019
Contact name James A Gagnon
E-mail(s) james.gagnon@gmail.com
Organization name University of Utah
Department Biological Sciences
Street address 1390 Presidents Circle, Crocker Science Center Receiving, Crocker Science Center Receiving
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
 
Platforms (1)
GPL18413 Illumina HiSeq 2500 (Danio rerio)
Samples (9)
GSM2362847 Wild type 2 hpf replicate 1
GSM2362848 Wild type 2 hpf replicate 2
GSM2362849 MZnanog 2 hpf
Relations
BioProject PRJNA350823
SRA SRP092186

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE89245_2hr_gene_exp.diff.gz 3.2 Mb (ftp)(http) DIFF
GSE89245_4hr_gene_exp.diff.gz 3.3 Mb (ftp)(http) DIFF
GSE89245_6hr_gene_exp.diff.gz 3.3 Mb (ftp)(http) DIFF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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