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Series GSE89755 Query DataSets for GSE89755
Status Public on Jun 01, 2017
Title Exosomal microRNAs in the giant panda (Ailuropoda melanoleuca) breast milk: the potential maternal regulators for the development of newborn cubs
Organisms Ailuropoda melanoleuca; Bambusa vulgaris
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Purpose:To present the miRNA expression profiles in giant panda milk exosomes across five lactation stages (0, 3, 7, 15 and 30 days after birth), aiming to provide new information for investigations into the physiological functions of the giant panda milk
Methods: Three females were sampled in all, and each individual were sampled over multiple lactations, including 0, 3, 7, 15 and 30 days after delivery. Breast milk samples (5-10 ml) were collected from each stages. Total RNA isolated from individuals in five lactation stages (0, 7, 15 and 30 days after delivery) were pooled in equal quantities for each stage
Results: Here, we illustrated the species and expression characteristics of exosome-loaded miRNAs existing in giant panda breast milk during distinct lactation periods, and highlighted the enrichment of immune- and development-related endogenous miRNAs in colostral and mature giant panda milk, which are stable even in certain hash conditions, like low pH and high concentration of RNAase, by the protection of extracellular vesicles.These findings indicate that breast milk may allow dietary intake of maternal miRNAs by infants for the regulation of postnatal development. We also demonstrated that the exogenous plant miRNA from the primary food source of giant panda (bamboo) were detected in the exosomes of giant panda breast milk, which were predicted to be of regulatory role in basic cell metabolism and neuron development. This result suggested that the dietary plant miRNAs were able to be absorbed by host cell and then secreted to body fluids as potential cross-kingdom regulators.
Conclusions: Exosomal miRNAs in the giant panda breast milk may be the crucial maternal regulators for the development of intrinsic ‘slink’ newborn cubs.
 
Overall design Three females were sampled in all, and each individual were sampled over multiple lactations, including 0, 3, 7, 15 and 30 days after delivery. Breast milk samples (5-10 ml) were collected from each stages. Total RNA isolated from individuals in five lactation stages (0, 7, 15 and 30 days after delivery) were pooled in equal quantities for each stage.
 
Contributor(s) Ma J, Wang C
Citation(s) 28615713
Submission date Nov 10, 2016
Last update date Jul 03, 2019
Contact name long ke ren
E-mail(s) longkeren@163.com
Organization name sichuan agriculture university
Department 1 Institute of Animal Genetics & Breeding
Lab pig
Street address Huimin road, 211#
City Wen’jiang,Chengu
State/province Sichuan
ZIP/Postal code 611130
Country China
 
Platforms (2)
GPL22660 Illumina HiSeq 2000 (Bambusa vulgaris)
GPL22661 Illumina HiSeq 2000 (Ailuropoda melanoleuca)
Samples (8)
GSM2388075 Bamboo.tar.gz
GSM2388076 Giant panda_breast milk_0d.tar.gz
GSM2388077 Giant panda_breast milk_3d_replicate1.tar.gz
Relations
BioProject PRJNA353101
SRA SRP093296

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE89755_miRNA_list.xlsx 164.2 Kb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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