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Status |
Public on Jan 12, 2017 |
Title |
Infection of Arabidopsis thaliana seedlings with the Pseudomonas syringae strain DC3000 cor- carrying the effector HopBB1 |
Organism |
Arabidopsis thaliana |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
This study evaluates the transcriptome of Arabidopsis thaliana infected with the Pseudomonas syringae strain DC3000 cor- carrying the type three secretion system effector HopBB1
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Overall design |
Two-week-old Arabidopsis thaliana seedlings (Col-0 ecotype) were sprayed with a mock solution (10 mM MgCl2) or bacteria [Pto DC3000 (EV), Pto DC3000 cor- (EV); Pto DC3000 cor- (HopBB1); Pto DC3000 cor- (HopBB1G126D)] at OD600=0.2 with 10mM MgCl2 and 0.04% Silwet L-77. Samples were harvested 24 hours after infection. This experiment included three biological replicates, each one corresponding to approximately 30 seedlings grown in the same pot.
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Contributor(s) |
Teixeira P, Yang L, Dangl J |
Citation(s) |
28132837 |
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Submission date |
Nov 18, 2016 |
Last update date |
May 15, 2019 |
Contact name |
Paulo Teixeira |
E-mail(s) |
paulojt@usp.br
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Phone |
+551934294344
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Organization name |
University of São Paulo (ESALQ/USP)
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Department |
Biology
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Street address |
Av. Pádua Dias, 11
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City |
Piracicaba |
State/province |
SP |
ZIP/Postal code |
13418-900 |
Country |
Brazil |
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Platforms (1) |
GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
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Samples (15)
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This SubSeries is part of SuperSeries: |
GSE90606 |
The Pseudomonas syringae type III effector HopBB1 fine tunes pathogen virulence by degrading host transcriptional repressors |
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Relations |
BioProject |
PRJNA354373 |
SRA |
SRP093675 |