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Series GSE90071 Query DataSets for GSE90071
Status Public on Jan 12, 2017
Title Infection of Arabidopsis thaliana seedlings with the Pseudomonas syringae strain DC3000 cor- carrying the effector HopBB1
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary This study evaluates the transcriptome of Arabidopsis thaliana infected with the Pseudomonas syringae strain DC3000 cor- carrying the type three secretion system effector HopBB1
 
Overall design Two-week-old Arabidopsis thaliana seedlings (Col-0 ecotype) were sprayed with a mock solution (10 mM MgCl2) or bacteria [Pto DC3000 (EV), Pto DC3000 cor- (EV); Pto DC3000 cor- (HopBB1); Pto DC3000 cor- (HopBB1G126D)] at OD600=0.2 with 10mM MgCl2 and 0.04% Silwet L-77. Samples were harvested 24 hours after infection. This experiment included three biological replicates, each one corresponding to approximately 30 seedlings grown in the same pot.
 
Contributor(s) Teixeira P, Yang L, Dangl J
Citation(s) 28132837
Submission date Nov 18, 2016
Last update date May 15, 2019
Contact name Paulo Teixeira
E-mail(s) paulojt@usp.br
Phone +551934294344
Organization name University of São Paulo (ESALQ/USP)
Department Biology
Street address Av. Pádua Dias, 11
City Piracicaba
State/province SP
ZIP/Postal code 13418-900
Country Brazil
 
Platforms (1)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (15)
GSM2397037 MgCl2_rep1
GSM2397038 DC3000_rep1
GSM2397039 DC3000 cor- EV_rep1
This SubSeries is part of SuperSeries:
GSE90606 The Pseudomonas syringae type III effector HopBB1 fine tunes pathogen virulence by degrading host transcriptional repressors
Relations
BioProject PRJNA354373
SRA SRP093675

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE90071_BDE_counts.txt.gz 457.3 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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