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Series GSE90235 Query DataSets for GSE90235
Status Public on Dec 07, 2016
Title polyA mRNA RNA-seq from HeLa-S3 (ENCSR000CPQ)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from the nuclear fraction of independent growths of cell line HeLa-S3. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000CPQ/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Nov 22, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (2)
GSM2400170 polyA mRNA RNA-seq from HeLa-S3 (ENCLB555ASN)
GSM2400171 polyA mRNA RNA-seq from HeLa-S3 (ENCLB555ASM)
Relations
Supersedes GSM765403

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE90235_ENCFF000FSD_contigs_hg19.bigBed 22.5 Mb (ftp)(http) BIGBED
GSE90235_ENCFF000FSE_exon_quantifications_hg19.gtf.gz 8.0 Mb (ftp)(http) GTF
GSE90235_ENCFF000FSH_exon_quantifications_hg19.gtf.gz 18.5 Mb (ftp)(http) GTF
GSE90235_ENCFF000FSL_gene_quantifications_hg19.gtf.gz 2.9 Mb (ftp)(http) GTF
GSE90235_ENCFF000FSN_gene_quantifications_hg19.gtf.gz 3.3 Mb (ftp)(http) GTF
GSE90235_ENCFF000FSP_gene_quantifications_hg19.gtf.gz 2.0 Mb (ftp)(http) GTF
GSE90235_ENCFF000FSR_splice_junctions_hg19.bigBed 12.0 Mb (ftp)(http) BIGBED
GSE90235_ENCFF000FTE_transcript_quantifications_hg19.gtf.gz 3.8 Mb (ftp)(http) GTF
GSE90235_ENCFF000FTH_transcript_quantifications_hg19.gtf.gz 5.0 Mb (ftp)(http) GTF
GSE90235_ENCFF000FTI_transcript_quantifications_hg19.gtf.gz 20.9 Mb (ftp)(http) GTF
GSE90235_ENCFF167PVT_splice_junctions_hg19.bed.gz 10.7 Mb (ftp)(http) BED
GSE90235_ENCFF826QKM_contigs_hg19.bed.gz 14.8 Mb (ftp)(http) BED
GSE90235_RAW.tar 3.4 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data are available on Series record
Processed data provided as supplementary file

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