|
Status |
Public on Feb 24, 2012 |
Title |
Extended Primate aCGH |
Platform organism |
Homo sapiens |
Sample organisms |
Callithrix sp.; Macaca sp.; Papio hamadryas; Hylobates sp.; Homo sapiens; Lemur sp. |
Experiment type |
Genome variation profiling by array
|
Summary |
This set includes individuals from 10 different primate species whose genomic DNA was used in an array-based comparative genomic hybridization (aCGH)using human cDNA microarrays to detect gene copy number variation across 10 primate species. An organism part comparison experiment design type compares tissues, regions, organs within or between organisms. Keywords: organism_part_comparison_design, array CGH
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|
|
Overall design |
Computed
|
|
|
Contributor(s) |
Kim Y, Dumas L |
Citation(s) |
- Dumas L, Kim YH, Karimpour-Fard A, Cox M et al. Gene copy number variation spanning 60 million years of human and primate evolution. Genome Res 2007 Sep;17(9):1266-77. PMID: 17666543
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|
Submission date |
Sep 12, 2007 |
Last update date |
Mar 17, 2012 |
Organization |
Stanford Microarray Database (SMD) |
E-mail(s) |
array@genome.stanford.edu
|
Phone |
650-498-6012
|
URL |
http://genome-www5.stanford.edu/
|
Department |
Stanford University, School of Medicine
|
Street address |
300 Pasteur Drive
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305 |
Country |
USA |
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Platforms (4)
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Samples (33)
|
GSM90753 |
GORILLA 1 [HSR (human female) vs. NG05251 (Gorilla male cell line)] |
GSM90754 |
ORANG 1 [HSR (human female) vs. NG12256 (Orangutan female cell line)] |
GSM90755 |
BONOBO 1 [HSJ (human male) vs. NG05253A (Bonobo cell line)] |
GSM90756 |
HUMAN 1 [HSR (human female) vs. HSR (human female)] |
GSM90757 |
ORANG 2 [HSR (human female) vs. NG06209 (Orangutan female cell line)] |
GSM90758 |
CHIMP 1 [HSJ (human male) vs. PTC (Chimp male)] |
GSM90759 |
CHIMP 4 [HSJ (human male) vs. PTS (Chimp male)] |
GSM90760 |
GORILLA 2 [HSR (human female) vs. GG2 (Gorilla female)] |
GSM90761 |
HUMAN 3 [HSJ (human male) vs. HSJ (human male)] |
GSM90762 |
GORILLA 3 [HSJ (human male) vs. GG4 (Gorilla male)] |
GSM90763 |
CHIMP 2 [HSR (human female) vs. PTD (Bonobo female)] |
GSM90764 |
BONOBO 2 [HSJ (human male) vs. BON4 (Bonobo male)] |
GSM90765 |
HUMAN 4 [HSR (human female) vs. HSJ (human male)] |
GSM90766 |
BONOBO 3 [HSE (human male) vs. BON5 (Bonobo male)] |
GSM90767 |
CHIMP 3 [HSR (human female) vs. PTF (Chimp female)] |
GSM90768 |
ORANG 3 [HSR (human female) vs. LA27 (Orangutan female)] |
GSM90769 |
HUMAN 5 [HSJ (human male) vs. HSE (human male)] |
GSM90770 |
HUMAN 2 [HSR (human female) vs. HSS (human female)] |
GSM229013 |
Expt. #8.2-13028381 |
GSM229014 |
shgc152|PR00495 Gibbon |
GSM229015 |
Expt. #8.4-Baboon2 |
GSM229016 |
Macaque #487 |
GSM229017 |
shgc153|PR00721 Gibbon |
GSM229018 |
shgc154|PR00036 Baboon |
GSM229019 |
shgc155|PR00338 Lemur |
GSM229020 |
shgc147|PR00644 Marmoset |
GSM229021 |
shgc156|PR00266 Lemur |
GSM229022 |
shgc148|PR00789 Marmoset |
GSM229023 |
shgc157|PR00254 Lemur |
GSM229024 |
shgc149|PR00295 Marmoset |
GSM229025 |
Expt. #8.4-Baboon |
GSM229026 |
shgc150|PR00242 Macaque |
GSM229027 |
shgc151|PR00381 Gibbon |
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Relations |
BioProject |
PRJNA102527 |