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Series GSE91087 Query DataSets for GSE91087
Status Public on Dec 19, 2017
Title Comparing gene expression in iPSC derived RPE from control and AMD donors
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary iPSC-RPE cells derived from a patient with AMD, whom harboured the Y402H mutation were compared to healthy donor RPE cells.
Overall design RPE cells cultured for 6 months on hanging inserts were dissociated with TryPLE, cells were centrifuged at high speed for 3 minutes, TryPLE solution was aspirated. The cell pellet was then re-suspended in PBS. Cells were centrifuged a second time, PBS was removed and cell pellets were snap frozen on dry ice and stored at -80c until use
Contributor(s) Lako M, Hallam D
Citation(s) 28913923
Submission date Dec 09, 2016
Last update date May 15, 2019
Contact name Dean Mark Hallam
Organization name Newcastle University
Department Institute of Genetic Medicine
Street address International Centre for Life
City Newcastle upon Tyne
State/province Tyne and Wear
ZIP/Postal code NE1 3BZ
Country United Kingdom
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (6)
GSM2420831 13-2-1
GSM2420832 13-2-2
GSM2420833 13-2-3
BioProject PRJNA356843
SRA SRP094838

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE91087_DE_genes_anno_1.5Fold_June2015.txt.gz 593.8 Kb (ftp)(http) TXT
GSE91087_PCA_plot_PC12.pdf 5.1 Kb (ftp)(http) PDF
GSE91087_Rplots.pdf 5.1 Kb (ftp)(http) PDF
GSE91087_Samples_basic_stats.xlsx 10.5 Kb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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