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| Status |
Public on Dec 31, 2018 |
| Title |
Genome-wide expression of HD-Zip genes in cassava |
| Organism |
Manihot esculenta |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To reveal the expression of HD-Zip genes in different tissues of cassava, samples from leaf (90 days after planting), stem (90 days after planting), early storage root (ESR, 90 days after planting), middle storage root (MSR, 150 days after planting) and last storage root (LSR, 210 days after planting) were collected for RNA-seq analysis. In addition, their expression was also examined in folded leaf (FL), full expanded leaf (FEL) and bottom leaf (BL), as well as root (RT) at 0, 3, 24 h after the treatment of PEG 6000.
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| Overall design |
Examination of gene expression in different tissues of three genotypes, or in leaves and root in response to PEG treatment in cassava
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| Contributor(s) |
Ding Z, Wang W |
| Citation missing |
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| Submission date |
Jan 03, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Zehong Ding |
| E-mail(s) |
dingzehong@itbb.org.cn
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| Organization name |
ITBB
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| Street address |
No.4 XueYuan Rd
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| City |
HaiKou |
| State/province |
HaiNan |
| ZIP/Postal code |
571101 |
| Country |
China |
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| Platforms (1) |
| GPL17194 |
Illumina HiSeq 2000 (Manihot esculenta) |
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| Samples (24)
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| Relations |
| BioProject |
PRJNA359998 |
| SRA |
SRP095968 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE93098_RAW.tar |
4.0 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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