|
| Status |
Public on Jan 07, 2017 |
| Title |
Specificity of Pitx3-Dependent Gene Regulatory Networks in Subsets of Midbrain Dopamine Neurons |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Global binding patterns of Pitx3 on genomic DNA of human dopaminergic cells revealed that Pitx3 is often co-recruited to regions that foster the formation of GATA-bHLH-BRN complexes, which usually involve Lmo co-regulatory proteins
|
| |
|
| Overall design |
ChIP assay followed by high throughput sequencing (ChIP-seq)
|
| |
|
| Contributor(s) |
Bifsha P, Balsalobre A, Drouin J |
| Citation(s) |
27514757 |
| |
| Submission date |
Jan 06, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Panojot Bifsha |
| E-mail(s) |
panojot.bifsha@gmail.com
|
| Organization name |
CHU Sainte-Justine
|
| Department |
Pediatrics
|
| Street address |
3175 Chemin de la Côte Ste-Catherine
|
| City |
Montreal |
| State/province |
QC |
| ZIP/Postal code |
H3T 1C5 |
| Country |
Canada |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (2) |
| GSM2449944 |
Pitx3 ChIPseq in human SHSY5Y cells stably expressing mouse Pitx3-3Fn |
| GSM2449945 |
SH-SY-IgG ChIPseq in SHSY5Y |
|
| Relations |
| BioProject |
PRJNA360450 |
| SRA |
SRP096206 |
