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| Status |
Public on Jan 15, 2020 |
| Title |
RNA-seq analyses of Fusarium graminearum wild-type GZ03639 and toxoflavin-sensitive mutant under toxoflavin condition |
| Organism |
Fusarium graminearum |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Bacterial pathogen Burkholderia glumae and fungal pathogen Fusarium graminearum cause similar disease symptoms and are often co-isolated from rice heads, inferring interactions between the two pathogens. F. graminearum is resistant to the bacterial toxin toxoflavin, a strong anti-microbial activity, produced by B. glumae. We isolated a toxoflavin-sensitive mutant from transcription factor deletion mutant library of F. graminearum. To understand genome-wide transcriptional profiling, we performed RNA-seq analyses of F. graminearum wild-type strain GZ03639 and toxoflavin-sensitive mutant strain, ∆GzZC190, under toxoflavin condition.
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| Overall design |
Two libraries constructed: fungal culture containing toxoflavin (100 mg l-1) of Fusarium graminearum GZ03639 wild-type and ∆GzZC190 mutant strain.
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| Contributor(s) |
Park J, Jung B, Lee J, Seo Y |
| Citation missing |
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| |
| Submission date |
Jan 15, 2017 |
| Last update date |
Jan 16, 2020 |
| Contact name |
Jungwook Park |
| E-mail(s) |
jjuwoogi@pusan.ac.kr
|
| Organization name |
Pusan National University
|
| Department |
Microbiology
|
| Street address |
Pusan National University, 2, Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 609-735, Korea
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| City |
Busan |
| ZIP/Postal code |
ASI|KR|KS012|PUSAN |
| Country |
South Korea |
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| Platforms (1) |
| GPL17573 |
Illumina HiSeq 2000 (Fusarium graminearum) |
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| Samples (2) |
| GSM2459331 |
mRNAs from Fusarium graminearum GZ03639 wild-type under toxoflavin condition |
| GSM2459332 |
mRNAs from Fusarium graminearum ∆GzZC190 mutant under toxoflavin condition |
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| Relations |
| BioProject |
PRJNA361404 |
| SRA |
SRP096785 |
