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| Status |
Public on Dec 22, 2017 |
| Title |
16MB binding of STAT1 and IRF1 transcription factors in IFNg treated and untreated HeLa cells using NimbleGen array |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
|
| Summary |
Analysis of STAT1 and IRF1 binding in IFNg treated and untreated HeLa cells for 6 hours was done using 50mer oligonucleotide probes at 30bp intervals tiling over non-repetitive 16MB gene locus (HG17).
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| Overall design |
Three replicates for each marker at each state.
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| |
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| Contributor(s) |
Bremner R, Xu Z, Yu T, Huang K |
| Citation(s) |
28274199 |
| Submission date |
Jan 31, 2017 |
| Last update date |
Dec 24, 2017 |
| Contact name |
Rod Bremner |
| Organization name |
Mount Sinai Hospital
|
| Department |
Lunenfeld-Tanenbaum Research Institute
|
| Lab |
Bremner's lab
|
| Street address |
600 University Ave
|
| City |
Toronto |
| State/province |
ON |
| ZIP/Postal code |
M5G 1X5 |
| Country |
Canada |
| |
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| Platforms (2) |
| GPL6673 |
Nimblegen human 16MB custom tiling array (HG17) design1 |
| GPL6674 |
Nimblegen human 16MB custom tiling array (HG17) design2 |
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| Samples (12)
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| GSM280433 |
16MB STAT1 chip-chip in 6 hours IFNg-treated human Hela cells-rep1 of 3 |
| GSM280444 |
16MB STAT1 chip-chip in 6 hours IFNg-untreated human Hela cells-rep1 of 3 |
| GSM280629 |
16MB IRF1 chip-chip in 6 hours IFNg-untreated human Hela cells-rep1 of 3 |
| GSM280630 |
16MB IRF1 chip-chip in 6 hours IFNg-untreated human Hela cells-rep2 of 3 |
| GSM280639 |
16MB IRF1 chip-chip in 6 hours IFNg-untreated human Hela cells-rep3 of 3 |
| GSM280640 |
16MB IRF1 chip-chip in 6 hours IFNg-treated human Hela cells-rep1 of 3 |
| GSM280661 |
16MB IRF1 chip-chip in 6 hours IFNg-treated human Hela cells-rep2 of 3 |
| GSM280662 |
16MB IRF1 chip-chip in 6 hours IFNg-treated human Hela cells-rep3 of 3 |
| GSM280663 |
16MB STAT1 chip-chip in 6 hours IFNg-untreated human Hela cells-rep2 of 3 |
| GSM280664 |
16MB STAT1 chip-chip in 6 hours IFNg-untreated human Hela cells-rep3 of 3 |
| GSM280791 |
16MB STAT1 chip-chip in 6 hours IFNg-treated human Hela cells-rep2 of 3 |
| GSM280792 |
16MB STAT1 chip-chip in 6 hours IFNg-treated human Hela cells-rep3 of 3 |
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| This SubSeries is part of SuperSeries: |
| GSE94357 |
Properties of STAT1 and IRF1 Enhancers and the Influence of SNPs |
|
| Relations |
| BioProject |
PRJNA369435 |
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