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Series GSE94473 Query DataSets for GSE94473
Status Public on Apr 01, 2017
Title An in vitro model of intestinal infection reveals a developmentally regulated transcriptome of Toxoplasma sporozoites and a NF-κB-like signature in infected host cells
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary Toxoplasmosis is a zoonotic infection affecting approximately 30% of the world’s human population. After sexual reproduction in the definitive feline host, Toxoplasma oocysts, each containing 8 sporozoites, are shed into the environment where they can go on to infect humans and other warm-blooded intermediate hosts. Here, we use an in vitro model to assess host transcriptomic changes that occur in the earliest stages of such infections. We show that infection of rat intestinal epithelial cells with mature sporozoites primarily results in higher expression of genes associated with Tumor Necrosis Factor alpha (TNFα) signaling via NF-κB. Furthermore, we find that, consistent with their biology, these mature, invaded sporozoites display a transcriptome intermediate between the previously reported day 10 oocysts and that of their tachyzoite counterparts. Thus, this study uncovers novel host and pathogen factors that may be critical for the establishment of a successful intracellular niche following sporozoite-initiated infection.
 
Overall design Rat intestinal epithelial cells were infected in duplicate with either Toxoplasma sporozoites or tachyzoites in the presence or absence of frozen sporozoites for 8 hours. Frozen sporozoites and lysates from uninfected cells were used as controls. The experiment was performed twice. Total RNA was extracted from the resulting 24 samples and the transcriptional profiles of both host and parasites were determined using RNA sequencing on the Illumina NextSeq platform
 
Contributor(s) Sagawa J, Fritz HM, Boothroyd JC
Citation(s) 28362800
Submission date Feb 03, 2017
Last update date May 15, 2019
Contact name Pascale S Guiton
E-mail(s) pguiton@stanford.edu
Organization name Stanford University
Department Microbiology and Immunology
Lab Dr. John Boothroyd
Street address Sherman Fairchild Science Building Stanford School of Medicine 299 campus Drive
City Stanford
State/province CA
ZIP/Postal code 94305-5124
Country USA
 
Platforms (1)
GPL20084 Illumina NextSeq 500 (Rattus norvegicus)
Samples (24)
GSM2476191 UN1
GSM2476192 UN2
GSM2476193 UN3
Relations
BioProject PRJNA369798
SRA SRP098807

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE94473_RAW.tar 6.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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