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| Status |
Public on Feb 14, 2018 |
| Title |
RNA-Seq of Glioblastoma stem-like cell (GSC) NSC11 with and without 2Gy irradiation. |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
RNA-Seq analyses of GSC line NSC11 after 2Gy irradiation in the transcriptome and the translatome to evaluate radiation-induced changes in alternative splicing.
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| Overall design |
Total Control (6), Total 2Gy1h (6), Polysome Control (6), Polysome 2Gy1h (6)
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| Contributor(s) |
Wahba A, Ryan MC, Shankavaram UT, Camphausen K, Tofilon PJ |
| Citation(s) |
29416646 |
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| Submission date |
Feb 08, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Philip J Tofilon |
| E-mail(s) |
tofilonp@mail.nih.gov
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| Phone |
301-496-2322
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| Organization name |
NCI
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| Department |
Radiation Oncology
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| Lab |
Tofilon
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| Street address |
10 Center Drive-MSC 1002
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| City |
Bethesda |
| State/province |
Maryland |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (24)
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| GSM2480997 |
NSC11 cells mock irradiated, collected at 1h, Total RNA, biological replicate 1 |
| GSM2480998 |
NSC11 cells mock irradiated, collected at 1h, Total RNA, biological replicate 2 |
| GSM2480999 |
NSC11 cells mock irradiated, collected at 1h, Total RNA, biological replicate 3 |
| GSM2481000 |
NSC11 cells mock irradiated, collected at 1h, Total RNA, biological replicate 4 |
| GSM2481001 |
NSC11 cells mock irradiated, collected at 1h, Total RNA, biological replicate 5 |
| GSM2481002 |
NSC11 cells mock irradiated, collected at 1h, Total RNA, biological replicate 6 |
| GSM2481003 |
NSC11 cells treated with 2Gy, collected at 1h, Total RNA, biological replicate 1 |
| GSM2481004 |
NSC11 cells treated with 2Gy, collected at 1h, Total RNA, biological replicate 2 |
| GSM2481005 |
NSC11 cells treated with 2Gy, collected at 1h, Total RNA, biological replicate 3 |
| GSM2481006 |
NSC11 cells treated with 2Gy, collected at 1h, Total RNA, biological replicate 4 |
| GSM2481007 |
NSC11 cells treated with 2Gy, collected at 1h, Total RNA, biological replicate 5 |
| GSM2481008 |
NSC11 cells treated with 2Gy, collected at 1h, Total RNA, biological replicate 6 |
| GSM2481009 |
NSC11 cells mock irradiated, collected at 1h, Polysome-bound RNA, biological replicate 1 |
| GSM2481010 |
NSC11 cells mock irradiated, collected at 1h, Polysome-bound RNA, biological replicate 2 |
| GSM2481011 |
NSC11 cells mock irradiated, collected at 1h, Polysome-bound RNA, biological replicate 3 |
| GSM2481012 |
NSC11 cells mock irradiated, collected at 1h, Polysome-bound RNA, biological replicate 4 |
| GSM2481013 |
NSC11 cells mock irradiated, collected at 1h, Polysome-bound RNA, biological replicate 5 |
| GSM2481014 |
NSC11 cells mock irradiated, collected at 1h, Polysome-bound RNA, biological replicate 6 |
| GSM2481015 |
NSC11 cells treated with 2Gy, collected at 1h, Polysome-bound RNA RNA, biological replicate 1 |
| GSM2481016 |
NSC11 cells treated with 2Gy, collected at 1h, Polysome-bound RNA RNA, biological replicate 2 |
| GSM2481017 |
NSC11 cells treated with 2Gy, collected at 1h, Polysome-bound RNA RNA, biological replicate 3 |
| GSM2481018 |
NSC11 cells treated with 2Gy, collected at 1h, Polysome-bound RNA RNA, biological replicate 4 |
| GSM2481019 |
NSC11 cells treated with 2Gy, collected at 1h, Polysome-bound RNA RNA, biological replicate 5 |
| GSM2481020 |
NSC11 cells treated with 2Gy, collected at 1h, Polysome-bound RNA RNA, biological replicate 6 |
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| Relations |
| BioProject |
PRJNA371832 |
| SRA |
SRP099078 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE94693_All_GeneExp_wideFormat_-_RPKM.txt.gz |
1.4 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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