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GEO help: Mouse over screen elements for information. |
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Status |
Public on Feb 14, 2018 |
Title |
RNA-Seq of Glioblastoma stem-like cell (GSC) NSC11 with and without 2Gy irradiation. |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
RNA-Seq analyses of GSC line NSC11 after 2Gy irradiation in the transcriptome and the translatome to evaluate radiation-induced changes in alternative splicing.
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Overall design |
Total Control (6), Total 2Gy1h (6), Polysome Control (6), Polysome 2Gy1h (6)
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Contributor(s) |
Wahba A, Ryan MC, Shankavaram UT, Camphausen K, Tofilon PJ |
Citation(s) |
29416646 |
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Submission date |
Feb 08, 2017 |
Last update date |
May 15, 2019 |
Contact name |
Philip J Tofilon |
E-mail(s) |
tofilonp@mail.nih.gov
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Phone |
301-496-2322
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Organization name |
NCI
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Department |
Radiation Oncology
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Lab |
Tofilon
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Street address |
10 Center Drive-MSC 1002
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City |
Bethesda |
State/province |
Maryland |
ZIP/Postal code |
20892 |
Country |
USA |
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Platforms (1) |
GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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Samples (24)
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GSM2480997 |
NSC11 cells mock irradiated, collected at 1h, Total RNA, biological replicate 1 |
GSM2480998 |
NSC11 cells mock irradiated, collected at 1h, Total RNA, biological replicate 2 |
GSM2480999 |
NSC11 cells mock irradiated, collected at 1h, Total RNA, biological replicate 3 |
GSM2481000 |
NSC11 cells mock irradiated, collected at 1h, Total RNA, biological replicate 4 |
GSM2481001 |
NSC11 cells mock irradiated, collected at 1h, Total RNA, biological replicate 5 |
GSM2481002 |
NSC11 cells mock irradiated, collected at 1h, Total RNA, biological replicate 6 |
GSM2481003 |
NSC11 cells treated with 2Gy, collected at 1h, Total RNA, biological replicate 1 |
GSM2481004 |
NSC11 cells treated with 2Gy, collected at 1h, Total RNA, biological replicate 2 |
GSM2481005 |
NSC11 cells treated with 2Gy, collected at 1h, Total RNA, biological replicate 3 |
GSM2481006 |
NSC11 cells treated with 2Gy, collected at 1h, Total RNA, biological replicate 4 |
GSM2481007 |
NSC11 cells treated with 2Gy, collected at 1h, Total RNA, biological replicate 5 |
GSM2481008 |
NSC11 cells treated with 2Gy, collected at 1h, Total RNA, biological replicate 6 |
GSM2481009 |
NSC11 cells mock irradiated, collected at 1h, Polysome-bound RNA, biological replicate 1 |
GSM2481010 |
NSC11 cells mock irradiated, collected at 1h, Polysome-bound RNA, biological replicate 2 |
GSM2481011 |
NSC11 cells mock irradiated, collected at 1h, Polysome-bound RNA, biological replicate 3 |
GSM2481012 |
NSC11 cells mock irradiated, collected at 1h, Polysome-bound RNA, biological replicate 4 |
GSM2481013 |
NSC11 cells mock irradiated, collected at 1h, Polysome-bound RNA, biological replicate 5 |
GSM2481014 |
NSC11 cells mock irradiated, collected at 1h, Polysome-bound RNA, biological replicate 6 |
GSM2481015 |
NSC11 cells treated with 2Gy, collected at 1h, Polysome-bound RNA RNA, biological replicate 1 |
GSM2481016 |
NSC11 cells treated with 2Gy, collected at 1h, Polysome-bound RNA RNA, biological replicate 2 |
GSM2481017 |
NSC11 cells treated with 2Gy, collected at 1h, Polysome-bound RNA RNA, biological replicate 3 |
GSM2481018 |
NSC11 cells treated with 2Gy, collected at 1h, Polysome-bound RNA RNA, biological replicate 4 |
GSM2481019 |
NSC11 cells treated with 2Gy, collected at 1h, Polysome-bound RNA RNA, biological replicate 5 |
GSM2481020 |
NSC11 cells treated with 2Gy, collected at 1h, Polysome-bound RNA RNA, biological replicate 6 |
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Relations |
BioProject |
PRJNA371832 |
SRA |
SRP099078 |
Supplementary file |
Size |
Download |
File type/resource |
GSE94693_All_GeneExp_wideFormat_-_RPKM.txt.gz |
1.4 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
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