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Series GSE94782 Query DataSets for GSE94782
Status Public on Aug 02, 2017
Title Genome-wide binding of MYCN protein in MYCN-amplified neuroblastoma cell lines
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The MYCN locus is amplified in about half of high-risk neuroblastoma tumors. To identify genomic loci occupied by MYCN protein in the MYCN-amplified neuroblastoma cell lines NGP, Kelly and NB-1643, we performed chromatin immunoprecipitation coupled with Next-Generation Sequencing (ChIP-seq) using an anti-MYCN antibody.
 
Overall design Identification of MYCN occupancy throughout the genome of MYCN-amplified neuroblastoma cells.
 
Contributor(s) Sussman RT, Rathi KS
Citation(s) 28898695, 32286315
Submission date Feb 10, 2017
Last update date Apr 27, 2020
Contact name John M Maris
E-mail(s) Maris@email.chop.edu
Organization name Children's Hospital of Philadelphia
Street address 3501 Civic Center Blvd, CTRB
City Philadelphia
State/province Pennsylvania
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (6)
GSM2482828 NGP_MYCN_ChIPSeq
GSM2482829 Kelly_MYCN_ChIPSeq
GSM2482830 NB1643_MYCN_ChIPSeq
Relations
BioProject PRJNA374035
SRA SRP099215

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE94782_RAW.tar 2.2 Gb (http)(custom) TAR (of BW, NARROWPEAK, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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