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Series GSE94794 Query DataSets for GSE94794
Status Public on Aug 10, 2017
Title Transcriptome analysis of the endometrium, placenta, and liver in lactating and non-lactating dairy cows
Organism Bos taurus
Experiment type Expression profiling by array
Summary Infertility in lactating dairy cows is explained partially by the metabolic state associated with high milk production. The hypothesis was that lactating and non-lactating cows would differ in endometrial and placental transcriptomes during early pregnancy (day 28 to 42) and this difference would explain the predisposition for lactating cows to have embryonic loss at that time. Cows were either milked or not milked after calving. Reproductive [endometrium (caruncular and intercarunclar) and placenta] and liver tissues were collected on day 28, 35, and 42 of pregnancy. The primary hypothesis was rejected because no effect of lactation on mRNA abundance within reproductive tissues was found. Large differences within liver demonstrated the utility of the model to test an effect of lactation on tissue gene expression. Major changes in gene expression in reproductive tissues across time were found. Greater activation of the transcriptome for the recruitment and activation of macrophages was found in the endometrium and placenta. Changes in glucose metabolism between day 28 and 42 included greater mRNA abundance of rate-limiting genes for gluconeogenesis in intercaruncular endometrium and evidence for the establishment of aerobic glycolysis (Warburg effect) in the placenta. Temporal changes were predicted to be controlled by CSF1, PDGFB, and JUN. Production of nitric oxide and reactive oxygen species by macrophages was a mechanism to promote angiogenesis in the endometrium. Reported differences in pregnancy development for lactating versus non-lactating cows could be explained by systemic glucose availability to the conceptus and appear to be independent of the endometrial and placental transcriptomes.
 
Overall design Liver, intercaruncular endometrium, caruncular endometrium, and placenta were sampled from Holstein dairy cows that were either lactating or non-lactating. RNA was extracted and hybridized on Affymetrix arrays. Samples were collected when the cows were pregnant on days 28, 35, or 42 of pregnancy

Please note that Group refers to the months of the year when the samples were collected. Group 1 samples were collected during March to July. Group 2 samples were collected during September to December.
 
Contributor(s) Lucy MC, Moore SG
Citation(s) 28859278
Submission date Feb 10, 2017
Last update date Nov 09, 2017
Contact name Matthew Lucy
Organization name University of Missouri
Department Division of Animal Sciences
Street address 920 East Campus Drive
City Columbia
State/province Missouri
ZIP/Postal code 65211
Country USA
 
Platforms (1)
GPL2112 [Bovine] Affymetrix Bovine Genome Array
Samples (160)
GSM2482997 Caruncular_Lactating_1
GSM2482998 Caruncular_Lactating_2
GSM2482999 Caruncular_Lactating_3
Relations
BioProject PRJNA374344

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE94794_RAW.tar 351.9 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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