|
| Status |
Public on Oct 01, 2017 |
| Title |
Substrate-based regulation in gut fungi |
| Organisms |
Neocallimastix californiae; Anaeromyces robustus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Differential expression analysis of overall transcriptome in response to varying carbon source
|
| |
|
| Overall design |
RNAseq of Neocallimastix californiae (G1) and Anaeromyces robustus (S4) grown on glucose, maltose, cellobiose, cellulose, reed canary grass, switchgrass, and corn stover as carbon sources. RNA was isolated during exponential growth and sequenced on an Illumina NextSeq.
|
| |
|
| Contributor(s) |
Henske JK, Solomon KV, O'Malley MA |
| Citation missing |
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| |
| Submission date |
Feb 28, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
John Henske |
| E-mail(s) |
johnhenske@engineering.ucsb.edu
|
| Organization name |
University of California, Santa Barbara
|
| Department |
Department of Chemical Engineering
|
| Street address |
Engineering II Building
|
| City |
Santa Barbara |
| State/province |
CA |
| ZIP/Postal code |
93106-5080 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL23123 |
Illumina NextSeq 500 (Neocallimastix sp. KS-2015) |
| GPL23124 |
Illumina NextSeq 500 (Anaeromyces sp. KS-2015) |
|
| Samples (43)
|
|
| Relations |
| BioProject |
PRJNA377241 |
| SRA |
SRP100831 |
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