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Series GSE95479 Query DataSets for GSE95479
Status Public on Oct 01, 2017
Title Substrate-based regulation in gut fungi
Organisms Neocallimastix californiae; Anaeromyces robustus
Experiment type Expression profiling by high throughput sequencing
Summary Differential expression analysis of overall transcriptome in response to varying carbon source
 
Overall design RNAseq of Neocallimastix californiae (G1) and Anaeromyces robustus (S4) grown on glucose, maltose, cellobiose, cellulose, reed canary grass, switchgrass, and corn stover as carbon sources. RNA was isolated during exponential growth and sequenced on an Illumina NextSeq.
 
Contributor(s) Henske JK, Solomon KV, O'Malley MA
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Submission date Feb 28, 2017
Last update date May 15, 2019
Contact name John Henske
E-mail(s) johnhenske@engineering.ucsb.edu
Organization name University of California, Santa Barbara
Department Department of Chemical Engineering
Street address Engineering II Building
City Santa Barbara
State/province CA
ZIP/Postal code 93106-5080
Country USA
 
Platforms (2)
GPL23123 Illumina NextSeq 500 (Neocallimastix sp. KS-2015)
GPL23124 Illumina NextSeq 500 (Anaeromyces sp. KS-2015)
Samples (43)
GSM2514929 G1 Glucose 1
GSM2514930 G1 Glucose 2
GSM2514931 G1 Glucose 3
Relations
BioProject PRJNA377241
SRA SRP100831

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE95479_Anaeromyces_final_contigs.fa.gz 6.1 Mb (ftp)(http) FA
GSE95479_G1_substrate_raw_expectedcounts.txt.gz 760.9 Kb (ftp)(http) TXT
GSE95479_G1_substrate_raw_tpm.txt.gz 958.9 Kb (ftp)(http) TXT
GSE95479_Neocallimastix_final_contigs.fa.gz 10.1 Mb (ftp)(http) FA
GSE95479_S4_substrate_raw_expectedcounts.txt.gz 467.5 Kb (ftp)(http) TXT
GSE95479_S4_substrate_raw_tpm.txt.gz 532.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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