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Series GSE95543 Query DataSets for GSE95543
Status Public on Sep 06, 2017
Title KLHL41 stabilizes skeletal muscle sarcomeres by nonproteolytic ubiquitination
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Maintenance of muscle function requires assembly of contractile proteins into highly organized sarcomeres. Mutations in Kelch-like protein 41 (KLHL41) cause nemaline myopathy, a fatal muscle disorder associated with sarcomere disarray. We generated KLHL41 mutant mice, which display lethal disruption of sarcomeres and aberrant expression of muscle structural and contractile proteins, mimicking the hallmarks of the human disease. We show that KLHL41 is poly-ubiquitinated and acts, at least in part, by preventing aggregation and degradation of nebulin, an essential component of the sarcomere. Furthermore, inhibition of KLHL41 poly-ubiquitination prevents its stabilization of nebulin, suggesting a unique role for ubiquitination in protein stabilization. These findings provide new insights into the molecular etiology of nemaline myopathy and reveal a mechanism whereby KLHL41 stabilizes sarcomeres and maintains muscle function by acting as a molecular chaperone. Similar mechanisms for protein stabilization likely contribute to the actions of other Kelch proteins.
 
Overall design Gene expression profile was generated comparing wild type (WT) and KLHL41 knockout mice, by deep sequencing, with three biological replicates, using Illumina HiSeq 2500.
 
Contributor(s) Ramirez-Martinez A, Olson EN
Citation(s) 28826497
Submission date Mar 01, 2017
Last update date May 15, 2019
Contact name Andres Ramirez-Martinez
E-mail(s) andres.ramirezmartinez@utsouthwestern.edu
Organization name UTSW Medical Center
Department Molecular Biology
Lab Olson Lab
Street address 6000 Harry Hines Blvd.
City Dallas
State/province TX
ZIP/Postal code 75390-9148
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (6)
GSM2516120 WT1
GSM2516121 WT2
GSM2516122 WT3
Relations
BioProject PRJNA377410
SRA SRP100902

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE95543_Klhl41-KO_vs_WT_edgeR_fdr_0.05_fc_1.5_filter.txt.gz 14.3 Kb (ftp)(http) TXT
GSE95543_Klhl41-featurecount.cpm.txt.gz 660.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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