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GEO accession:
Series GSE95642
Query DataSets for GSE95642
Status
Public on Apr 09, 2018
Title
DNA-binding pluripotency factors and DNA demethylases can cooperate to maintain pluripotent stem cell identity even in the absence of Brd4
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
29662175
Submission date
Mar 02, 2017
Last update date
May 15, 2019
Contact name
Richard Koche
E-mail(s)
kocher@mskcc.org
Organization name
Memorial Sloan Kettering Cancer Center
Street address
417 E. 68th St.
City
New York
State/province
New York
ZIP/Postal code
10065
Country
USA
Platforms (1)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
Samples (46)
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More...
GSM2345243
SL-Brd4
GSM2345244
SL-Brd4-Input
GSM2345245
SL2i-Brd4
GSM2345246
SL2i-Brd4-Input
GSM2345247
SLJQ-Brd4
GSM2345248
SLJQ-Brd4-Input
GSM2345249
SL-Med1
GSM2345250
SL-Med1-Input
GSM2345251
SL2i-Med1
GSM2345252
SL2i-Med1-Input
GSM2345253
SLJQ-Med1
GSM2345254
SLJQ-Med1-Input
GSM2345255
SL2iJQ-Med1
GSM2345256
SL2iJQ-Med1-Input
GSM2520539
Serum LIF rep1
GSM2520540
Serum LIF rep2
GSM2520541
Serum LIF + JQ1 rep1
GSM2520542
Serum LIF + JQ1 rep2
GSM2520543
Serum LIF + 2i rep1
GSM2520544
Serum LIF + 2i rep2
GSM2520545
Serum LIF + 2i + JQ1 rep1
GSM2520546
Serum LIF + 2i + JQ1 rep2
GSM2520547
DMSO (control for Nanog Tg) rep1
GSM2520548
DMSO (control for Nanog Tg) rep2
GSM2520549
JQ1 (control for Nanog Tg) rep1
GSM2520550
JQ1 (control for Nanog Tg) rep2
GSM2520551
Nanog transgene + DMSO rep1
GSM2520552
Nanog transgene + DMSO rep2
GSM2520553
Nanog transgene + JQ1 rep1
GSM2520554
Nanog transgene + JQ1 rep2
GSM2520555
Line5-9 Tet1/2 dKO + DMSO rep1
GSM2520556
Line5-9 Tet1/2 dKO + DMSO rep2
GSM2520557
Line5-9 Tet1/2 dKO + JQ1 rep1
GSM2520558
Line5-9 Tet1/2 dKO + JQ1 rep2
GSM2520559
Line5-9 Tet1/2 dKO + DMSO + Nanog rep1
GSM2520560
Line5-9 Tet1/2 dKO + DMSO + Nanog rep2
GSM2520561
Line5-9 Tet1/2 dKO + JQ1 + Nanog rep1
GSM2520562
Line5-9 Tet1/2 dKO + JQ1 + Nanog rep2
GSM2520563
Line5-14 Tet1/2 dKO + DMSO rep1
GSM2520564
Line5-14 Tet1/2 dKO + DMSO rep2
GSM2520565
Line5-14 Tet1/2 dKO + JQ1 rep1
GSM2520566
Line5-14 Tet1/2 dKO + JQ1 rep2
GSM2520567
Line5-14 Tet1/2 dKO + DMSO + Nanog rep1
GSM2520568
Line5-14 Tet1/2 dKO + DMSO + Nanog rep2
GSM2520569
Line5-14 Tet1/2 dKO + JQ1 + Nanog rep1
GSM2520570
Line5-14 Tet1/2 dKO + JQ1 + Nanog rep2
This SuperSeries is composed of the following SubSeries:
GSE88769
Transcription factors and Tet1/2 enable Brd4-independent maintenance of stem cell identity
GSE95641
DNA-binding pluripotency factors and DNA demethylases can cooperate to maintain pluripotent stem cell identity even in the absence of Brd4 [ATAC-seq]
Relations
BioProject
PRJNA377751
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE95642_RAW.tar
10.7 Gb
(http)
(custom)
TAR (of BW)
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