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| Status |
Public on Apr 28, 2023 |
| Title |
Vitis riparia shoot tip transcriptome in response to long and short photoperiod. |
| Organism |
Vitis riparia |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Winter season with reduced day length (photoperiod); led to the growth cessation, dormancy induction and cold acclimation in woody perennial plants. To develop an understanding of the photoperiod signal transduction in Vitis riparia; shoot tip transcriptome profiling was performed under differential photoperiod treatments (long (LD, 15h) and short day (SD, 13h)) for 7 or 21 days after shoots reached 10 nodes (LD7, SD7, LD21 or SD21).
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| Overall design |
Three biological replicates of LD and SD shoot tip RNA were sequenced and analysed.
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| Contributor(s) |
Fennell A, Smita S, Robben M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Mar 06, 2017 |
| Last update date |
Apr 28, 2023 |
| Contact name |
Anne Y Fennell |
| E-mail(s) |
anne.fennell@sdstate.edu
|
| Organization name |
South Dakota State University
|
| Department |
Department of Plant Science
|
| Lab |
Edgar S. McFadden Biostress Lab
|
| Street address |
North Campus Drive
|
| City |
Brookings |
| State/province |
South Dakota |
| ZIP/Postal code |
57006 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL23121 |
Illumina HiScanSQ (Vitis riparia) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA378172 |
| SRA |
SRP101423 |
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