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Series GSE96774 Query DataSets for GSE96774
Status Public on Aug 01, 2017
Title Replication defective viral products exploit a cellular pro-survival mechanism to establish persistent infections
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Replication defective viral genomes (DVGs) generated during virus replication are the primary triggers of antiviral immunity in many infections. However, DVGs also provide viruses with an evolutionary advantage by facilitating virus persistence. Why and how DVGs and the host interact to achieve these two divergent functions remains unknown. We report that DVGs engage a MAVS-mediated antiviral response that promotes apoptosis on highly infected cells while protecting cells dominated by DVGs from death. We find that MAVS signaling leads to the expression of TNF and of the pro-survival TNFR2/TRAF1 proteins. TNF induces apoptosis of infected cells lacking DVGs, while its signaling in cells enriched in DVGs promotes their survival. These results identify DVGs as pivotal for virus-host co-existence and reveal a MAVS-mediated axis that while promoting the death of infected cells, protects those cells producing toxic cytokines from apoptosis, thereby facilitating viral persistence.
 
Overall design Four sub-populations of cells (ND, FL-high, DVG-high and INT) were sorted from single viral infection previously by FISH FACS sorting. RNA-seq was performed in two technical repeats with the RNA sample of each repeats pooled from 3 independent FISH-FACS sortings (6 independent sortings in total).
 
Contributor(s) Lopez C, Beiting D, Sun Y, Xue J
Citation(s) 28986577, 30995283
NIH grant(s)
Grant ID Grant title Affiliation Name
R21 AI127832 Mechanism for virus persistence after acute infections UNIVERSITY OF PENNSYLVANIA Carolina B Lopez
R01 AI083284 A novel virus-derived adjuvant UNIVERSITY OF PENNSYLVANIA Carolina B Lopez
Submission date Mar 17, 2017
Last update date May 29, 2019
Contact name Carolina B Lopez
E-mail(s) clopezzalaquett@wustl.edu
Phone 3142737026
Organization name Washington University in St. Louis
Street address 425 S Euclid Ave
City St Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (8)
GSM2543118 R1-FL_S1
GSM2543119 R1-DVG_S2
GSM2543120 R1-INT_S3
Relations
BioProject PRJNA379611
SRA SRP102087

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE96774_TxiAbundance.txt.gz 965.6 Kb (ftp)(http) TXT
GSE96774_TxiCounts.txt.gz 1.6 Mb (ftp)(http) TXT
GSE96774_normData_batchCorrect.txt.gz 1.2 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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