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Series GSE9687 Query DataSets for GSE9687
Status Public on Nov 26, 2007
Title Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
Organism Glycine max
Experiment type Expression profiling by array
Summary Four selected soybean genotypes with varying degrees of quantitative resistance that were well-characterized were selected for this study. These included two resistant genotypes (V71-370, Conrad), and two susceptible genotypes (Sloan, and VP-RIL9). A P. sojae isolate, PT2004C2.S1 , which is virulent to the soybean genotypes carrying Rps1a, Rps1b, Rps1k, Rps2, Rps3a, Rps3c, Rps4, Rps5, Rps6, or Rps7, was used in this study.
Keywords: Genotypic variation on quantitative resistance
 
Overall design The experiment was repeated four times.
Factors assayed included:

Genotype: 4 genotypes (V71-370, Conrad, Sloan, and VP-RIL9)
Treatment: pathogen-inoculated vs. mock-inoculated
Sampling time: 1, 2, 3 and 5dpi
Sampling sites: Upper section and Lower section (for 3dpi and 5dpi pathogen-inoculated samples only) vs whole section (for all the mock-inoculated samples at all time points, and the inoculated samples at 1and 2dpi).
 
Contributor(s) Tyler BM, Maroof S, Dorrance A, Hoeschele I, Martin SS
Citation Analysis of Genes Underlying Soybean Quantitative Trait Loci Conferring Partial Resistance to Phytophthora sojae. Hehe Wang, LaChelle Waller, Sucheta Tripathy, Steven K. St. Martin, Lecong Zhou, Konstantinos Krampis, Dominic M. Tucker, Yongcai Mao, Ina Hoeschele, M.A. Saghai Maroof, Brett M. Tyler, and Anne E. Dorrance, The Plant Genome, Jul 2010; 23 - 40. doi: 10.3835/?plantgenome2009.12.0029
Submission date Nov 26, 2007
Last update date Nov 22, 2016
Contact name sucheta Tripathy
E-mail(s) sutripa@vbi.vt.edu
Phone 5402318138
Organization name Virginia Tech
Department Virginia Bioinformatics Institute
Lab Tyler lab
Street address 1, Washington street
City Blacksburg
State/province VA
ZIP/Postal code 24061
Country USA
 
Platforms (1)
GPL4592 [Soybean] Affymetrix Soybean Genome Array
Samples (160)
GSM244778 10_CON.I2W2.CEL, Experimental replicate 2
GSM244779 10_SLO.M1W4.CEL, Experimental replicate 4
GSM244780 10_V71.M3W3.CEL, Experimental replicate 3
Relations
BioProject PRJNA103583

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE9687_RAW.tar 729.6 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table
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