NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE97407 Query DataSets for GSE97407
Status Public on Jan 12, 2018
Title Targeted inhibition of TET1 transcription as a potent therapeutic strategy for acute myeloid leukemia
Organism Homo sapiens
Experiment type Methylation profiling by high throughput sequencing
Summary Effective therapy of acute myeloid leukemia (AML) remains an unmet need. DNA methylcytosine dioxygenase Ten-eleven translocation 1 (TET1) is a potent oncogene in AML. Through a series of data analysis and drug screening, we identified two compounds (i.e., NSC-311068 and NSC-370284) that selectively suppress TET1 transcription and 5-hydroxymethylcytosine (5hmC) modification, and effectively inhibit cell viability in AML with high level expression of TET1 (i.e., TET1-high AML), including AML carrying t(11q23)/MLL-rearrangements and t(8;21) AML. NSC-311068 and especially NSC-370284 significantly repressed TET1-high AML progression in vivo. UC-514321, an optimized derivative of NSC-370284, exhibited an even more potent therapeutic effect and prolonged the median survival of TET1-high AML mice over three folds. NSC-370284 and its derivative showed strong synergistic effects with standard chemotherapy. NSC-370284 directly targeted STAT3/5, transcriptional activators of TET1, and thus repressed TET1 expression. Our results highlight the therapeutic potential of targeting the STAT/TET1 axis by selective inhibitors in AML treatment.
 
Overall design Selective 5hmC chemical labeling approach to profile genome-wide 5hmC distributions across different samples
 
Contributor(s) Jiang X, Nie J, Cui X, He C, Chen J
Citation(s) 29235481
Submission date Apr 05, 2017
Last update date May 15, 2019
Contact name Xiaolong Cui
E-mail(s) xiaolong.cui@northwestern.edu
Organization name Northwestern University
Department Department of Preventive Medicine
Street address 680 N Lake Shore Drive
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (7)
GSM2564010 ctrl-1
GSM2564011 370284-1
GSM2564012 514321-1
Relations
BioProject PRJNA381698
SRA SRP103071

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97407_RAW.tar 3.6 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap