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Series GSE97871 Query DataSets for GSE97871
Status Public on Jun 14, 2017
Title Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 28737770
Submission date Apr 17, 2017
Last update date May 15, 2019
Contact name Jelena M Telenius
E-mail(s) jelena.telenius@ndcls.ox.ac.uk
Organization name Oxford University
Department Weatherall Institute of Molecular Medicine (WIMM)
Lab Genome Biology Research Group
Street address MRC Weatherall Institute of Molecular Medicine University of Oxford John Radcliffe Hospital Headington
City Oxford
ZIP/Postal code OX3 9DS
Country United Kingdom
 
Platforms (3)
GPL16417 Illumina MiSeq (Mus musculus)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (88)
GSM2579373 Mouse D29 mutant erythroid cells ATAC-seq biological replicate 1
GSM2579374 Mouse D29 mutant erythroid cells ATAC-seq biological replicate 2
GSM2579375 Mouse D3839 mutant erythroid cells ATAC-seq biological replicate 1
This SuperSeries is composed of the following SubSeries:
GSE97866 Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo (ATAC-Seq)
GSE97867 Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo (Capture-C"
GSE97869 Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo (ChIP-Seq)
Relations
BioProject PRJNA383115

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97871_RAW.tar 5.9 Gb (http)(custom) TAR (of BW, WIG)
SRA Run SelectorHelp

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