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Series GSE98013 Query DataSets for GSE98013
Status Public on Nov 20, 2017
Title Small RNAs from 11 Drosophila species
Organisms Drosophila ananassae; Drosophila erecta; Drosophila grimshawi; Drosophila mojavensis; Drosophila persimilis; Drosophila pseudoobscura; Drosophila sechellia; Drosophila simulans; Drosophila virilis; Drosophila yakuba; Drosophila willistoni
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Annotation of small RNAs from 11 Drosophila species for the purpose of non-coding RNA annotation and comparative genomics assessment.
 
Overall design Small RNA samples from 11 Drosophila species.
 
Contributor(s) Mohammed J, Flynt AS, Lai EC
Citation(s) 29233922
NIH grant(s)
Grant ID Grant title Affiliation Name
T32 GM083937 Tri-Institutional Training Program in Computational Biology and Medicine WEILL MEDICAL COLLEGE OF CORNELL UNIVERSITY DAVID J CHRISTINI
R01 GM102192 Computational methods for human genomic data integration: demography, selection, COLD SPRING HARBOR LABORATORY Adam Charles Siepel
P20 GM103476 Administrative Core THE UNIVERSITY OF SOUTHERN MISSISSIPPI Glen Shearer
R01 GM083300 Non-canonical miRNA biogenesis mechanisms in Drosophila and mammals Sloan Kettering Institute for Cancer Research Eric C Lai
R01 NS083833 Mechanism and biology of widespread distal 3'UTR utilization in the CNS Sloan Kettering Institute for Cancer Research Eric C Lai
Submission date Apr 20, 2017
Last update date Jul 25, 2021
Contact name Jaaved Mohammed
E-mail(s) jaavedm@stanford.edu
Organization name Stanford University
Department Chemical and Systems Biology
Lab Joanna Wysocka
Street address 265 Campus Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (22)
GPL9321 Illumina Genome Analyzer II (Drosophila erecta)
GPL9958 Illumina Genome Analyzer II (Drosophila pseudoobscura)
GPL10061 Illumina Genome Analyzer II (Drosophila yakuba)
Samples (56)
GSM2585490 Drosophila ananassae male body small RNA [V105_dana_male_body]
GSM2585491 Drosophila ananassae head small RNA [V106_dana_head]
GSM2585492 Drosophila ananassae head small RNA [V055_dana_head]
Relations
BioProject PRJNA383669
SRA SRP104403

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE98013_RAW.tar 900.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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