|
| Status |
Public on Apr 24, 2017 |
| Title |
Identification of symmetric methylation of histone H4 arginine 3 on KSHV genome (iSLKBac16WT ChIP-Seq) |
| Organism |
Human gammaherpesvirus 8 |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
The objective of this study was to identify the symmetric methylation sites on KSHV genome during latency and lytic reactivation
|
| |
|
| Overall design |
KSHV infected iSLKBac16WT cells were induced with doxycycline for 24h to trigger the lytic reactivation, cells were crosslinked and subjected for chromatin isolation and sonication. ChIP assay was performed using specific antibodies.
|
| |
|
| Contributor(s) |
Verma SC |
| Citation(s) |
28678843 |
| |
| Submission date |
Apr 24, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Subhash C Verma |
| E-mail(s) |
scverma@medicine.nevada.edu
|
| Phone |
775-682-6743
|
| Organization name |
University of Nevada, Reno
|
| Department |
Microbiology and Immunology
|
| Lab |
Verma Lab
|
| Street address |
1664 N Virginia Street, MS 320
|
| City |
Reno |
| State/province |
NV |
| ZIP/Postal code |
89557 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL23366 |
Illumina NextSeq 500 (Human gammaherpesvirus 8) |
|
| Samples (4)
|
| GSM2586923 |
24hInd Input (iSLK-Bac16WT cells) |
| GSM2586924 |
24hInd ORF59 ChIP (iSLK-Bac16WT cells) |
| GSM2586925 |
24hInd Control IgG ChIP (iSLK-Bac16WT cells) |
| GSM2586926 |
24hInd + 0.5mM PFA ORF59 ChIP (iSLK-Bac16WT cells) |
|
| This SubSeries is part of SuperSeries: |
| GSE98058 |
Identification of symmetric methylation of histone H4 arginine 3 on KSHV genome |
|
| Relations |
| BioProject |
PRJNA383982 |
| SRA |
SRP105042 |
Less...
More...