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| Status |
Public on May 02, 2017 |
| Title |
Gene expression profiling of the octuple jazQ mycT mutant shows that the MYC transcription factors control expression of many genes mis-regulated in jazQ, and also identifies some MYC-indepedent expression changes |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The quintuple jaz mutant jazQ and the triple myc mutant mycT affect plant defense and growth. We used RNA-sequencing to query the transcriptomes of jazQ and mycT, as well as the combined jazQ mycT octuple mutatant, and examined how these mutations alter the expression of genes mis-regulated in jazQ. The data highlight how jasmonate signaling pathways are largely governed by MYC transcription factors, but also highlight some MYC-independent expression patterns.
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| Overall design |
Analysis of Col-0 (wildtype), jazQ, mycT, and jazQ mycT (four genotypes), with three biological replicates per genotype - 12 total samples.
This series contains the re-use of 6 samples from GSE79012 (Col-0 and jazQ).
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| |
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| Contributor(s) |
Major IT, Campos ML, Howe GA |
| Citation(s) |
28649719 |
| |
| Submission date |
May 01, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Gregg A Howe |
| E-mail(s) |
howeg@msu.edu
|
| Organization name |
Michigan State University
|
| Department |
Plant Research Laboratory
|
| Street address |
612 Wilson Rd
|
| City |
East Lansing |
| State/province |
MI |
| ZIP/Postal code |
48824 |
| Country |
USA |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA384979 |
| SRA |
SRP105773 |
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