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| Status |
Public on Aug 17, 2017 |
| Title |
Dynamics of gene expression during devepolement and expansion of vegetative stem internodes of bioenergy sorghum |
| Organism |
Sorghum bicolor |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Bioenergy sorghum accumulates 75% of shoot biomass in stem internodes. Grass stem internodes are formed during vegetative growth and elongate in response to developmental and environmental signals. To identify genes and molecular mechanisms that modulate the extent of internode growth, we conducted microscopic and transcriptomic analysis of four successive sub-apical vegetative internodes representing different stages of internode development of the bioenergy sorghum genotype R.07020.
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| |
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| Overall design |
A developmental time course of four sucessive internodes located in the zone of internode elongation each harvested in triplicate for RNA-seq analysis.
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| Contributor(s) |
Kebrom TH, McKinley BA, Mullet JE |
| Citation(s) |
28649278 |
| |
| Submission date |
May 11, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
brian adam mckinley |
| E-mail(s) |
brian.a.mckinley@ag.tamu.edu
|
| Phone |
4096796868
|
| Organization name |
texas A&M University
|
| Department |
biochemistry and biophysics
|
| Lab |
john mullet
|
| Street address |
2128 tamu
|
| City |
college station |
| State/province |
tx |
| ZIP/Postal code |
77802 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL21615 |
Illumina HiSeq 2500 (Sorghum bicolor) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA386306 |
| SRA |
SRP106878 |
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