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Series GSE99383 Query DataSets for GSE99383
Status Public on Dec 31, 2023
Title Transcriptome diversity among rice root types in salinity tolerant and sensitive varieties
Organism Oryza sativa
Experiment type Expression profiling by high throughput sequencing
Summary Differences in gene expression were compared among nodal roots, S-type lateral roots, and L-type lateral roots of salinity tolerant and sensitive rice varieties.
 
Overall design Using RNA sequencing, the gene expression patterns of different root types were compared in both salinity tolerant and sensitive rice varieties.
 
Contributor(s) Cartagena J
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Submission date May 29, 2017
Last update date Jan 02, 2024
Contact name Joyce Cartagena
Organization name Nagoya University
Street address Furo-cho, Chikusa-ku
City Nagoya
ZIP/Postal code 464-8601
Country Japan
 
Platforms (1)
GPL19290 Illumina HiSeq 2500 (Oryza sativa)
Samples (6)
GSM2643302 C-N1 (salinity tolerant)
GSM2643303 C-S1 (salinity tolerant)
GSM2643304 C-L1 (salinity tolerant)
Relations
BioProject PRJNA388342
SRA SRP108223

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99383_gene_exp_diff.diff.gz 15.7 Mb (ftp)(http) DIFF
GSE99383_genes.count_tracking.txt.gz 1.6 Mb (ftp)(http) TXT
GSE99383_genes.fpkm_tracking.gz 2.1 Mb (ftp)(http) FPKM_TRACKING
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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