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Series GSE99639 Query DataSets for GSE99639
Status Public on May 23, 2019
Title Mnase-Seq study of Arabidopsis thaliana mutant chr5
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Comparative study of nuclesome occupancy in Arabidopsis thaliana mutant chr5 and wild type strain.
 
Overall design Mnase digest of chromatin from wt and chr5 mutants, library construction of protected DNA, Illumina Sequencing
Web link https://academic.oup.com/pcp/article/58/12/2202/4557152
 
Contributor(s) Zou B, Sun Q, Zhang W, Hua J
Citation(s) 29048607
Submission date Jun 02, 2017
Last update date Jul 25, 2021
Contact name Jian Hua
Organization name Cornell University
Department Plant Biology
Lab Hua
Street address 158 Emerson Hall
City Ithaca
State/province NY
ZIP/Postal code 14853
Country USA
 
Platforms (1)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (2)
GSM2649108 wild type
GSM2649109 chr5
Relations
BioProject PRJNA389129
SRA SRP108537

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99639_RAW.tar 170.0 Kb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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