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Sample GSM100 Query DataSets for GSM100
Status Public on Jul 19, 2001
Title Renal cell carcinoma: rccc-5, tumor 2 (part 1 of 2)
Sample type RNA
 
Source name renal clear cell carcinoma (primary tumor)
Organism Homo sapiens
Extracted molecule total RNA
 
Description clinical.stage=I
grade.of.malignancy=2
type=clearcell
tumor.site=kidney
multiplefoci=TRUE
survival.months=42
died=FALSE
tumorsize.cm=3
sex=f
age=58
RNA=poly-A+
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice) and foreground/background ratio
Keywords = renal clear cell carcinoma
Keywords = kidney
Lot batch = batch=ReImage2 filter=180166 reuse=6 date=05-Aug-1999
 
Submission date Jul 19, 2001
Last update date May 27, 2005
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL9
Series (1)
GSE3 Renal Cell Carcinoma Differential Expression

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-SIGNAL_BKD

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 9166 7396 1770
2 6118 7396 -1278
3 3788 7396 -3608
4 9505 7396 2109
5 12917 7396 5521
6 124821 7396 117425
7 7768 7396 372
8 13547 7396 6151
9 13415 7396 6019
10 5523 7396 -1873
11 7011 7396 -385
12 11542 7396 4146
13 9012 7396 1616
14 8672 7396 1276
15 13427 7396 6031
16 7360 7396 -36
17 15697 7569 8128
18 2685 7569 -4884
19 7023 7569 -546
20 11265 7569 3696

Total number of rows: 36864

Table truncated, full table size 803 Kbytes.




Supplementary data files not provided

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