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Sample GSM100262 Query DataSets for GSM100262
Status Public on Aug 31, 2010
Title Expression data of CC_LN64
Sample type RNA
 
Source name Patient_64
Organism Homo sapiens
Characteristics Tissue: Colorecal Cancer
Extracted molecule total RNA
Extraction protocol Surgically isolated colorectal cancers were immediately frozen in liquid nitrogen. Tissues were lysed and total RNA was isolated using RNeasy Mini Kit (QIAGEN, Chatswort,CA) according to the manufacturer's instructions.
Label biotin
Label protocol Approximately 8 ug of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Training-Lymph(-)
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Mar 13, 2006
Last update date Aug 31, 2009
Contact name Toshiaki Watanabe
Phone 81-3-5800-8653
Organization name University of Tokyo
Department Department of Surgical Oncology
Street address 7-3-1, Hongo
City Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113-8655
Country Japan
 
Platform ID GPL570
Series (1)
GSE4459 Gene expression signature and the prediction of lymph node metastases

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)

Data table
ID_REF VALUE ABS_CALL
1007_s_at 534.2 P
1053_at 62.2 P
117_at 59.1 P
121_at 61.8 P
1255_g_at 2.5 A
1294_at 137.6 P
1316_at 13.2 P
1320_at 12.6 A
1405_i_at 81.5 P
1431_at 1.5 A
1438_at 24.9 A
1487_at 132.1 P
1494_f_at 10.2 A
1552256_a_at 180.2 P
1552257_a_at 302.1 P
1552258_at 4.3 A
1552261_at 13 A
1552263_at 65.5 P
1552264_a_at 107.9 P
1552266_at 14.4 P

Total number of rows: 54675

Table truncated, full table size 927 Kbytes.




Supplementary data files not provided

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