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Sample GSM1002663

Query DataSets for GSM1002663

Status

Public on Sep 12, 2012

Title

Duke_Combined_GM19239_wgEncodeOpenChromSynth

Sample type

SRA

Source name

GM19239

Organism

Homo sapiens

Characteristics

lab: Duke
lab description: Crawford - Duke University
datatype: Combined
datatype description: Multi-assay Synthesis
cell: GM19239
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed
cell lineage: mesoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
composite: wgEncodeOpenChromSynth
labversion: 1.0

Biomaterial provider

Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM19239

Treatment protocol

None

Growth protocol

GM19239_Crawford_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromSynth

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina Genome Analyzer

Data processing

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromSynth

Submission date

Sep 12, 2012

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9052

Series (1)

GSE40833

DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom(Duke/UNC/UTA)

Relations

Reanalysis of

Reanalysis of

Reanalysis of

BioSample

Named Annotation

GSM1002663_hg19_wgEncodeOpenChromSynthGm19239Pk.bed.gz

SRA

SRX100911

SRA

SRX102978

SRA

SRX117802

Supplementary file	Size	Download	File type/resource
GSM1002663_hg19_wgEncodeOpenChromSynthGm19239Pk.bed.gz	8.6 Mb	(ftp)(http)	BED
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file