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Sample GSM1003825

Query DataSets for GSM1003825

Status

Public on Sep 19, 2012

Title

UW_DnaseDgf_T-Naive_adult-8wks

Sample type

SRA

Source name

T-Naive

Organism

Mus musculus

Characteristics

lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: T-Naive
cell organism: mouse
cell description: Naive T cells: CD4+, CD25-
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
age: adult-8wks
age description: Adult 8 weeks
labexpid: DS17080
labversion: Hotspot-v5.2
replicate: 1
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse

Biomaterial provider

Stam lab

Growth protocol

Tissue_Stam_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDgf

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina HiSeq 2000

Data processing

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDgf

Submission date

Sep 13, 2012

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL13112

Series (2)

GSE40869	DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341	Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence

Relations

SRA

SRX188652

BioSample

SAMN01179399

Named Annotation

GSM1003825_mm9_wgEncodeUwDgfTnaiveC57bl6MAdult8wksRawRep1.bigWig

Named Annotation

GSM1003825_mm9_wgEncodeUwDgfTnaiveC57bl6MAdult8wksRawRep2.bigWig

Named Annotation

GSM1003825_mm9_wgEncodeUwDgfTnaiveC57bl6MAdult8wksSigRep1.bigWig

Named Annotation

GSM1003825_mm9_wgEncodeUwDgfTnaiveC57bl6MAdult8wksSigRep2.bigWig

Supplementary file	Size	Download	File type/resource
GSM1003825_mm9_wgEncodeUwDgfTnaiveC57bl6MAdult8wksHotspotsRep1.broadPeak.gz	2.0 Mb	(ftp)(http)	BROADPEAK
GSM1003825_mm9_wgEncodeUwDgfTnaiveC57bl6MAdult8wksHotspotsRep2.broadPeak.gz	2.3 Mb	(ftp)(http)	BROADPEAK
GSM1003825_mm9_wgEncodeUwDgfTnaiveC57bl6MAdult8wksPkRep1.narrowPeak.gz	1.5 Mb	(ftp)(http)	NARROWPEAK
GSM1003825_mm9_wgEncodeUwDgfTnaiveC57bl6MAdult8wksPkRep2.narrowPeak.gz	1.6 Mb	(ftp)(http)	NARROWPEAK
GSM1003825_mm9_wgEncodeUwDgfTnaiveC57bl6MAdult8wksRawRep1.bigWig	336.0 Mb	(ftp)(http)	BIGWIG
GSM1003825_mm9_wgEncodeUwDgfTnaiveC57bl6MAdult8wksRawRep2.bigWig	328.6 Mb	(ftp)(http)	BIGWIG
GSM1003825_mm9_wgEncodeUwDgfTnaiveC57bl6MAdult8wksSigRep1.bigWig	749.9 Mb	(ftp)(http)	BIGWIG
GSM1003825_mm9_wgEncodeUwDgfTnaiveC57bl6MAdult8wksSigRep2.bigWig	692.2 Mb	(ftp)(http)	BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file