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Sample GSM1004 Query DataSets for GSM1004
Status Public on Feb 12, 2002
Title swi1 minimal medium experiment 1
Sample type RNA
 
Channel 1
Source name swi1 deletion (YPS1)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Wild-type (FY2)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description swi1, minimal (a) FY2 vs. YPS1
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = 26swi1m
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL67
Series (1)
GSE21 snf/swi mutants of S. cerevisiae.

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1318 1256 8939 12059 11027 1098 1032 921 9845 10766 0 0 .139 1.254 97 97 .811 .908 1.234 1.101 0 1349 69 27 37 65 75 .139
2 1345 1296 8539 12211 11123 1147 1088 971 9931 10902 0 0 .218 1.22 97 100 .768 .86 1.303 1.163 0 1298 45 26 34 75 83 .218
3 1304 1296 6263 8686 7598 1115 1088 971 6784 7755 0 0 .115 1.172 97 100 .824 .923 1.213 1.083 0 1252 45 26 34 86 94 .115
4 1316 1320 344 1529 433 1120 1096 978 387 1365 .956 0 .17 .961 13 20 .794 .889 1.259 1.125 1.192 1274 45 26 34 96 104 .17
5 1348 1336 -63 664 -440 1134 1104 985 -393 592 .338 0 0 0 0 0 .338 1266 45 26 34 107 115
6 1382 1360 579 1482 362 1162 1120 1000 323 1323 .561 0 -.842 .857 26 20 1.599 1.793 .625 .558 .379 1272 45 26 34 118 126 -.842
7 1533 1376 33208 44748 43620 1235 1128 1007 38946 39953 0 0 .23 1.435 95 100 .761 .853 1.314 1.173 0 1243 69 26 36 128 138 .23
8 1543 1360 1751 2615 1519 1229 1096 978 1356 2334 .933 0 -.369 .94 73 82 1.153 1.291 .868 .774 .829 1214 45 28 36 140 148 -.369
9 1474 1312 17966 15044 13988 1190 1056 942 12490 13432 0 0 -.524 .77 100 100 1.284 1.438 .779 .695 0 1268 45 27 35 150 158 -.524
10 1430 1280 735 8150 7142 1140 1008 900 6376 7276 .641 0 3.117 10.15 64 100 .103 .115 9.717 8.675 4.498 1255 45 27 36 160 169 3.117
11 1260 1224 2738 3850 2906 1004 944 842 2595 3437 .905 0 -.077 1.13 73 80 .942 1.055 1.061 .948 .932 1253 45 28 36 172 180 -.077
12 1242 1184 201 1129 241 961 888 792 216 1008 .642 0 .104 1.073 2 13 .834 .931 1.199 1.075 .608 1289 45 27 35 181 189 .104
13 1211 1176 3632 5641 4793 885 848 757 4279 5036 .92 0 .237 1.362 60 75 .758 .849 1.32 1.178 1.205 1254 45 28 36 194 202 .237
14 1175 1144 3299 5385 4577 838 808 721 4087 4808 .915 0 .309 1.59 53 62 .721 .807 1.387 1.239 1.268 1269 45 28 36 205 213 .309
15 1157 1128 5113 7949 7149 825 800 714 6383 7097 0 0 .32 1.567 73 80 .715 .801 1.398 1.248 0 1261 45 28 36 215 223 .32
16 1139 1128 249 1122 322 817 800 714 287 1001 .783 0 .205 1.386 15 24 .773 .868 1.293 1.153 .746 1251 45 28 36 224 232 .205
17 1142 1128 1201 2310 1510 829 800 714 1348 2062 .816 0 .167 1.3 64 66 .795 .891 1.257 1.122 1.061 1265 45 28 36 235 243 .167
18 1185 1144 474 894 78 867 816 728 70 798 .608 0 -2.759 .192 46 0 6.077 6.771 .165 .148 .16 1274 45 28 36 245 253 -2.759
19 1224 1176 16 826 -14 906 840 750 -12 737 .216 0 1 0 0 -.875 .173 1265 45 28 36 256 264
20 1234 1168 64 858 18 917 840 750 16 766 .363 0 -2 .5 0 0 3.556 4 .281 .25 .245 1282 45 28 36 267 275 -2

Total number of rows: 6384

Table truncated, full table size 801 Kbytes.




Supplementary data files not provided
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