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Sample GSM1005 Query DataSets for GSM1005
Status Public on Feb 12, 2002
Title snf2 minimal medium experiment 1
Sample type RNA
 
Channel 1
Source name snf2 deletion (FY31)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Wild-type (FY2)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description snf2, minimal (a) FY2 vs. FY31
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = 27swi2m
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL67
Series (1)
GSE21 snf/swi mutants of S. cerevisiae.

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1352 1264 10410 12087 11135 1082 952 842 9854 10696 0 0 -.079 1.113 100 100 .935 1.056 1.07 .947 0 1414 45 46 55 66 75 -.079
2 1405 1280 5238 7132 6172 1101 960 849 5462 6311 .884 0 .06 1.245 80 86 .849 .959 1.178 1.043 1.021 1325 45 45 54 76 85 .06
3 1411 1280 3989 5364 4404 1067 960 849 3897 4746 .887 0 -.034 1.099 75 84 .906 1.024 1.104 .977 .994 1272 45 45 54 87 96 -.034
4 1416 1272 41 1041 97 1019 944 835 86 921 .83 0 1.069 .965 8 11 .423 .477 2.366 2.098 1.021 1282 45 45 54 97 106 1.069
5 1465 1272 -118 719 -225 1122 944 835 -199 636 .63 0 .714 0 0 0 .752 1262 45 45 54 108 117
6 1521 1296 290 1263 295 1234 968 856 261 1117 .68 0 -.152 1.065 8 17 .983 1.111 1.017 .9 .873 1276 45 45 54 119 128 -.152
7 1519 1312 38594 52244 51260 1252 984 870 45363 46233 0 0 .233 1.397 100 100 .753 .851 1.328 1.175 0 1272 45 45 54 129 138 .233
8 1499 1328 1515 2348 1348 1273 1000 884 1193 2077 .864 0 -.345 .974 73 71 1.124 1.27 .89 .787 .761 1293 45 44 53 140 149 -.345
9 1426 1336 15596 14254 13238 1160 1016 899 11715 12614 0 0 -.413 .862 100 100 1.178 1.331 .849 .751 0 1296 45 44 53 150 159 -.413
10 1377 1328 396 6720 5712 1080 1008 892 5054 5946 .806 0 3.674 11.59 26 93 .069 .078 14.424 12.763 6.244 1244 45 45 54 162 171 3.674
11 1388 1312 3346 4469 3477 1089 992 877 3077 3954 .78 0 -.121 .949 73 82 .962 1.087 1.039 .92 .775 1272 45 44 53 172 181 -.121
12 1401 1336 -4 1111 103 1094 1008 892 91 983 .549 0 .967 0 2 0 .598 1265 45 44 53 182 191
13 1446 1368 2243 3530 2506 1116 1024 906 2217 3123 .879 0 -.017 1.026 60 66 .895 1.012 1.117 .988 .98 1262 45 44 53 193 202 -.017
14 1461 1400 2682 4173 3109 1131 1064 941 2751 3692 .871 0 .037 1.207 57 62 .863 .975 1.159 1.026 .906 1277 45 44 53 203 212 .037
15 1421 1400 4425 6366 5302 1082 1064 941 4692 5633 .885 0 .085 1.041 64 66 .835 .943 1.198 1.06 .993 1282 45 43 52 214 223 .085
16 1405 1368 341 1347 315 1075 1032 913 279 1192 .916 0 -.29 1 15 20 1.083 1.222 .924 .818 .871 1279 45 43 52 225 234 -.29
17 1394 1336 639 1734 726 1078 1008 892 642 1534 .853 0 .007 .934 44 55 .88 .995 1.136 1.005 .845 1275 45 43 52 235 244 .007
18 1454 1336 308 2348 1356 1135 992 877 1200 2077 .813 0 1.962 3.864 8 68 .227 .257 4.403 3.896 2.831 1269 45 43 52 246 255 1.962
19 1479 1360 439 1641 633 1158 1008 892 560 1452 .813 0 .351 1.216 13 22 .694 .784 1.442 1.276 .986 1276 45 43 52 256 265 .351
20 1479 1368 157 1207 191 1154 1016 899 169 1068 .585 0 .106 1 0 4 .822 .929 1.217 1.076 .551 1272 45 43 52 267 276 .106

Total number of rows: 6384

Table truncated, full table size 812 Kbytes.




Supplementary data files not provided
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