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Sample GSM1008577 Query DataSets for GSM1008577
Status Public on Sep 25, 2012
Title Duke_DnaseSeq_Medullo_D341
Sample type SRA
 
Source name Medullo_D341
Organism Homo sapiens
Characteristics datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
labversion: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05
replicate: 1,2
cell: Medullo_D341
cell organism: human
cell description: Medulloblastoma cell line of neuron or neuron precurosr origin
cell karyotype: cancer
cell sex: U
labversion: baseAlignCounts.pl v 1
Biomaterial provider Dr. Darrell Bigner at Duke University Medical Center
Growth protocol MedulloD341_Crawford_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
 
Submission date Sep 24, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE32970 Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)
Relations
SRA SRX189407
BioSample SAMN01730098
Named Annotation GSM1008577_hg19_wgEncodeOpenChromDnaseMedullod341BaseOverlapSignal.bigWig
Named Annotation GSM1008577_hg19_wgEncodeOpenChromDnaseMedullod341Sig.bigWig

Supplementary file Size Download File type/resource
GSM1008577_hg19_wgEncodeOpenChromDnaseMedullod341BaseOverlapSignal.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM1008577_hg19_wgEncodeOpenChromDnaseMedullod341Pk.narrowPeak.gz 2.5 Mb (ftp)(http) NARROWPEAK
GSM1008577_hg19_wgEncodeOpenChromDnaseMedullod341Sig.bigWig 3.2 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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