|
| Status |
Public on Sep 25, 2012 |
| Title |
Duke_DnaseSeq_Cerebellum_OC |
| Sample type |
SRA |
| |
|
| Source name |
Cerebellum_OC
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
labversion: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05
replicate: 1,2
cell: Cerebellum_OC
cell organism: human
cell description: Primary frozen cerebellum tissue from NICHD donor IDs 1104 (Rep B1), 602 (Rep B2), 1442 (Rep B3), all Caucasian
cell karyotype: normal
cell sex: M
labversion: baseAlignCounts.pl v 1
|
| Biomaterial provider |
NICHD
|
| Growth protocol |
CerebellumOC_Crawford_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
|
| |
|
| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
|
| |
|
| Submission date |
Sep 24, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE32970 |
Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University) |
|
| Relations |
| SRA |
SRX189413 |
| BioSample |
SAMN01730104 |
| Named Annotation |
GSM1008583_hg19_wgEncodeOpenChromDnaseCerebellumocBaseOverlapSignal.bigWig |
| Named Annotation |
GSM1008583_hg19_wgEncodeOpenChromDnaseCerebellumocSig.bigWig |
