|
| Status |
Public on Sep 25, 2012 |
| Title |
Duke_DnaseSeq_SK-N-SH |
| Sample type |
SRA |
| |
|
| Source name |
SK-N-SH
|
| Organism |
Homo sapiens |
| Characteristics |
biomaterial_type: immortalized cell line
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
labversion: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female
replicate: 1,2
line: SK-N-SH
cell organism: human
cell description: neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
labversion: baseAlignCounts.pl v 1
|
| Biomaterial provider |
ATCC
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
|
| |
|
| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
|
| |
|
| Submission date |
Sep 24, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (2) |
| GSE32970 |
Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University) |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX189415 |
| BioSample |
SAMN01730106 |
| Named Annotation |
GSM1008585_hg19_wgEncodeOpenChromDnaseSknshBaseOverlapSignal.bigWig |
| Named Annotation |
GSM1008585_hg19_wgEncodeOpenChromDnaseSknshSig.bigWig |
