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GEO accession:
Sample GSM1008586
Query DataSets for GSM1008586
Status
Public on Sep 25, 2012
Title
Duke_DnaseSeq_IMR90
Sample type
SRA
Source name
IMR90
Organism
Homo sapiens
Characteristics
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
labversion: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female
replicate: 1,2
cell: IMR90
cell organism: human
cell description: fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis
cell karyotype: normal
cell lineage: endoderm
cell sex: F
labversion: baseAlignCounts.pl v 1
Biomaterial provider
ATCC
Extracted molecule
genomic DNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
Library strategy
DNase-Hypersensitivity
Library source
genomic
Library selection
DNAse
Instrument model
Illumina Genome Analyzer
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
Submission date
Sep 24, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9052
Series (2)
GSE32970
Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)
GSE51334
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
SRA
SRX189416
BioSample
SAMN01730107
Named Annotation
GSM1008586_hg19_wgEncodeOpenChromDnaseImr90BaseOverlapSignal.bigWig
Named Annotation
GSM1008586_hg19_wgEncodeOpenChromDnaseImr90Sig.bigWig
Supplementary file
Size
Download
File type/resource
GSM1008586_hg19_wgEncodeOpenChromDnaseImr90BaseOverlapSignal.bigWig
1.5 Gb
(ftp)
(http)
BIGWIG
GSM1008586_hg19_wgEncodeOpenChromDnaseImr90Pk.narrowPeak.gz
2.4 Mb
(ftp)
(http)
NARROWPEAK
GSM1008586_hg19_wgEncodeOpenChromDnaseImr90Sig.bigWig
3.0 Gb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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