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Sample GSM1010 Query DataSets for GSM1010
Status Public on Feb 12, 2002
Title swi1 rich medium experiment 1
Sample type RNA
 
Channel 1
Source name swi1 deletion (YPS1)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Wild-type (FY2)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description swi1, YPD (a) FY2 vs. YPS1
ScanAlyze version unknown scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = swi1a
 
Submission date Feb 08, 2002
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL57
Series (1)
GSE21 snf/swi mutants of S. cerevisiae.

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT
1 1052 1016 3376 4363 3683 707 680 883 4783 5666 .96 0 .503 1.122 55 60 .917 .706 1.091 1.417 1.022 1400 45 54 62 84 92
2 1048 1000 2434 3088 2416 709 672 872 3138 4010 .928 0 .367 1 51 55 1.007 .776 .993 1.289 .896 1270 45 54 62 95 103
3 1025 984 1931 2444 1780 699 664 862 2312 3174 .932 0 .26 .927 48 55 1.085 .835 .922 1.197 .846 1218 45 54 62 107 115
4 1036 1008 92 810 130 693 680 883 168 1051 .935 0 .869 1.143 4 6 .708 .548 1.413 1.826 1.123 1210 45 54 62 119 127
5 1029 1008 355 737 57 695 680 883 74 957 .36 0 -2.262 .4 26 2 6.228 4.797 .161 .208 .12 1198 45 54 62 130 138
6 1010 992 324 879 207 686 672 872 269 1141 .866 0 -.268 .688 22 15 1.565 1.204 .639 .83 .459 1189 45 54 62 141 149
7 1015 984 21194 27812 27156 677 656 851 35268 36119 0 0 .735 1.405 80 88 .78 .601 1.281 1.664 0 1167 45 54 63 151 160
8 978 952 553 1109 477 649 632 820 620 1440 .839 0 .165 .779 18 26 1.159 .892 .863 1.121 .724 1141 69 53 63 162 172
9 972 944 17 673 49 642 624 810 64 874 .163 0 1.913 1.091 0 0 .347 .266 2.882 3.765 .131 1124 69 53 63 173 183
10 969 936 85 713 97 636 616 800 125 925 .531 0 .556 1.2 0 0 .876 .68 1.141 1.471 .545 1108 69 53 63 184 194
11 997 960 3 634 2 664 632 820 3 823 .197 0 0 .643 0 0 1.5 1 .667 1 .127 1108 69 53 63 195 205
12 1120 984 -15 649 -15 783 664 862 -20 842 .317 0 1 0 0 0 .272 1117 69 53 63 206 216
13 1161 1016 10766 7694 7006 836 688 893 9099 9992 0 0 -.243 .65 65 71 1.537 1.183 .651 .845 0 1153 69 53 63 217 227
14 1179 1056 5387 6200 5480 860 720 935 7116 8051 .927 0 .402 1.027 73 77 .983 .757 1.017 1.321 .917 1153 45 54 63 229 238
15 1102 1064 439 886 150 781 736 955 195 1150 .785 0 -1.171 .351 33 15 2.927 2.251 .342 .444 .268 1153 69 53 63 240 250
16 1099 1072 646 1219 483 772 736 955 628 1583 .948 0 -.041 .8 28 31 1.337 1.029 .748 .972 .732 1138 69 53 63 251 261
17 1106 1088 796 1446 702 777 744 966 911 1877 .913 0 .195 .939 40 43 1.134 .874 .882 1.144 .751 1132 69 53 63 262 272
18 1117 1096 715 3741 2981 788 760 987 3871 4858 .848 0 2.437 4.019 57 80 .24 .185 4.169 5.414 3.427 1132 45 54 63 273 282
19 1356 1120 721 1410 618 970 792 1028 803 1831 .887 0 .155 .831 37 39 1.167 .898 .857 1.114 .809 1132 69 53 63 284 294
20 1372 1128 376 926 126 984 800 1038 164 1202 .657 0 -1.197 .496 31 11 2.984 2.293 .335 .436 .315 1124 69 53 63 295 305

Total number of rows: 6400

Table truncated, full table size 773 Kbytes.




Supplementary data files not provided
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