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Sample GSM1012 Query DataSets for GSM1012
Status Public on Feb 12, 2002
Title swi1 rich medium experiment 2
Sample type RNA
 
Channel 1
Source name swi1 deletion (YPS1)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Wild-type (FY2)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description swi1, YPD (c), FY2 vs. YPS1
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f65swi1
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL65
Series (1)
GSE21 snf/swi mutants of S. cerevisiae.

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 52 51 136 140 109 34 31 36 126 162 .9 0 -.11 .76 71 67 1.248 1.079 .801 .926 .854 1014 208 72 88 83 99 -.11
2 52 51 10 43 12 34 31 36 14 50 .36 0 .485 .88 21 34 .833 .714 1.2 1.4 .332 937 208 70 86 100 116 .485
3 56 51 362 381 348 39 33 38 405 443 .899 0 .162 .943 77 79 1.04 .894 .961 1.119 .857 888 202 71 87 119 135 .162
4 67 53 52 83 49 43 34 39 57 96 .625 0 .132 .866 71 77 1.061 .912 .942 1.096 .644 842 208 71 87 134 150 .132
5 98 57 592 600 564 65 36 41 656 697 .803 -100 .923 97 98 1.05 .902 .953 1.108 .787 699 302 71 92 152 173 .148
6 109 57 346 335 298 86 37 43 346 389 .782 -100 .767 98 100 1.161 1 .861 1 .998 654 208 73 89 169 185 0
7 79 52 619 1649 1615 62 34 39 1878 1917 4.024 0 1.601 1.078 28 28 .383 .33 2.609 3.034 1.507 767 208 73 89 186 202 1.601
8 52 50 -5 29 41 29 33 33 -.001 0 1.308 3 13 0 -.001 784 208 73 89 204 220
9 62 50 -3 28 -1 41 29 33 -1 32 .027 0 .773 1 6 0 .021 753 202 73 89 223 239
10 68 50 -3 26 -3 50 29 33 -3 30 -.001 0 .889 3 6 0 -.001 777 208 73 89 238 254
11 58 49 2 26 -3 45 29 33 -3 30 .09 0 .63 7 6 -1.5 .067 798 208 73 89 256 272
12 51 49 -1 28 39 28 32 32 .118 0 .8 4 8 0 .086 766 208 73 89 273 289
13 49 48 -1 28 30 28 32 32 .166 0 .7 6 9 0 .124 767 208 73 89 290 306
14 48 48 1 28 28 28 32 32 .149 0 .636 7 10 0 .108 768 208 73 89 308 324
15 49 48 26 -2 28 28 32 -2 30 -.056 0 .737 5 5 0 -.036 741 208 73 89 325 341
16 50 49 -2 27 -1 29 28 32 -1 31 .027 0 1 3 8 0 .019 767 208 73 89 342 358
17 49 49 -1 26 -1 28 27 31 -1 30 -.021 0 .917 8 8 0 -.014 768 208 73 89 360 376
18 49 49 -2 26 27 26 30 30 .134 0 1.4 2 9 0 .102 741 208 73 89 377 393
19 50 49 -3 24 -3 32 27 31 -4 27 -.002 0 .546 3 7 0 -.001 767 208 73 89 394 410
20 51 49 25 -3 33 28 32 -3 29 .024 0 .571 6 8 0 .016 768 208 73 89 412 428

Total number of rows: 8832

Table truncated, full table size 1015 Kbytes.




Supplementary data files not provided
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