|
| Status |
Public on Sep 20, 2013 |
| Title |
S. solea 4 dph_D |
| Sample type |
RNA |
| |
|
| Source name |
whole larvae collected at 4 dph
|
| Organism |
Solea solea |
| Characteristics |
condition: pool of 10 larvae collected at 4 dph
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Extracted according to QiAgen RNeasy MiniKit protocol for tissue samples
|
| Label |
Cyanine 3
|
| Label protocol |
Amplified and labeled according to Agilent One-Color Microarray-Based Gene Expression Analysis protocol
|
| |
|
| Hybridization protocol |
Hybridized according to Agilent One-Color Microarray-Based Gene Expression Analysis protocol
|
| Scan protocol |
Array was scanned according to standard Agilent protocol at a resolution of 5 microns modifying default setting to scan the slide twice at two different sensitivity settings (XDRHi 100% and XDRLo 10%) yielding two .tif images. Agilent FE software then generated one FE file per sample.
|
| Description |
Solea solea
|
| Data processing |
Data processed with FeatureExtraction v9.5 and quantile normalized using R2.6.1 statistical software
|
| |
|
| Submission date |
Oct 01, 2012 |
| Last update date |
May 26, 2016 |
| Contact name |
Serena Ferraresso |
| E-mail(s) |
serena.ferraresso@unipd.it
|
| Phone |
+39 049 8272506
|
| Organization name |
University of Padova
|
| Department |
Dept of Comparative Biomedicine and Food Science
|
| Street address |
Viale dell'Università
|
| City |
Legnaro (PD) |
| State/province |
Padova |
| ZIP/Postal code |
35020 |
| Country |
Italy |
| |
|
| Platform ID |
GPL16124 |
| Series (1) |
| GSE41261 |
Exploring the larval transcriptome of the common sole (Solea solea L.) |
|
| Relations |
| Reanalyzed by |
GSM2178263 |
