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GEO accession:
Sample GSM1012719
Query DataSets for GSM1012719
Status
Public on Aug 12, 2013
Title
RMS38_N
Sample type
genomic
Source name
ARMS tumor specimen
Organism
Homo sapiens
Characteristics
disease: RMS
histology subtype: ARMS
Treatment protocol
None
Growth protocol
Cell lines were grown according to standard conditions.
Extracted molecule
genomic DNA
Extraction protocol
Genomic DNA was extracted from resected fresh tumor blocks or freeze tumor blocks.
Label
Biotin
Label protocol
Affymetrix standard protocol
Hybridization protocol
Affymetrix standard protocol
Scan protocol
Affymetrix standard protocol
Description
Hybridized to 250K_Nsp
Data processing
CEL files and CHP files (generated by Affymetrix GTYPE using the DM algorithm) were processed by CNAG/AsCNAR 3.0
Submission date
Oct 01, 2012
Last update date
Aug 12, 2013
Contact name
Riki Nishimura
E-mail(s)
riki81@hotmail.com
Organization name
University of Tokyo
Street address
7-3-1, Hongo, Bunkyo-ku
City
Tokyo
ZIP/Postal code
1138655
Country
Japan
Platform ID
GPL3718
Series (1)
GSE41263
Affymetrix SNP array data for pediatric rhabdomyosarcoma (RMS)
Data table header descriptions
ID_REF
VALUE
Genotypes: AA, AB, BB, No Call
CONFIDENCE
RAS1
Relative allele signal for the data in the first probe group
RAS2
Relative allele signal for the data in the second probe group
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL
Data table
ID_REF
VALUE
CONFIDENCE
RAS1
RAS2
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL
AFFX-5Q-123
No Call
0
0
0
0
0
0
0
AFFX-5Q-456
No Call
0
0
0
0
0
0
0
AFFX-5Q-789
No Call
0
0
0
0
0
0
0
AFFX-5Q-ABC
No Call
0
0
0
0
0
0
0
AFFX-barcodeA
No Call
0
0
0
0
0
0
0
AFFX-barcodeB
No Call
0
0
0
0
0
0
0
AFFX-barcodeC
No Call
0
0
0
0
0
0
0
AFFX-barcodeD
No Call
0
0
0
0
0
0
0
AFFX-barcodeE
No Call
0
0
0
0
0
0
0
AFFX-barcodeF
No Call
0
0
0
0
0
0
0
AFFX-barcodeG
No Call
0
0
0
0
0
0
0
AFFX-barcodeH
No Call
0
0
0
0
0
0
0
AFFX-barcodeI
No Call
0
0
0
0
0
0
0
AFFX-barcodeJ
No Call
0
0
0
0
0
0
0
AFFX-barcodeK
No Call
0
0
0
0
0
0
0
AFFX-barcodeL
No Call
0
0
0
0
0
0
0
AFFX-barcodeM
No Call
0
0
0
0
0
0
0
AFFX-barcodeN
No Call
0
0
0
0
0
0
0
AFFX-barcodeO
No Call
0
0
0
0
0
0
0
AFFX-barcodeP
No Call
0
0
0
0
0
0
0
Total number of rows:
262338
Table truncated, full table size
20676 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1012719_RMS38_N.CEL.gz
26.1 Mb
(ftp)
(http)
CEL
GSM1012719_RMS38_N.CHP.gz
459.4 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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