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Sample GSM1014 Query DataSets for GSM1014
Status Public on Feb 12, 2002
Title snf2 rich medium experiment 3
Sample type RNA
 
Channel 1
Source name snf2 deletion (FY31)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name Wild-type (FY2)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description snf2, YPD (d), FY2 vs. FY31
ScanAlyze version 2.24 scanning software was used.
Keywords = Transcription
Keywords = swi_snf
Lot batch = f66snf2
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL65
Series (1)
GSE21 snf/swi mutants of S. cerevisiae.

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1089 1083 74 2932 -123 3027 3055 3055 -123 2932 .628 -100 1.877 9 5 -1.662 1.568 1005 208 41 57 98 114
2 1152 1178 -71 3055 -235 3178 3290 3290 -235 3055 .749 -100 2.642 3 4 0 2.124 945 208 39 55 115 131
3 1214 1237 74 3318 -134 3325 3452 3452 -134 3318 .74 -100 2.775 16 15 -1.811 2.409 895 202 40 56 134 150
4 1343 1311 -211 3073 -595 3704 3668 3668 -595 3073 .68 -100 3.349 2 3 0 1.972 833 208 40 56 149 165
5 1408 1330 318 3841 121 3824 3720 3720 121 3841 0 -100 2.727 29 23 2.628 2.628 .381 .381 0 689 302 40 61 167 188 -1.394
6 1318 1264 -76 2783 -674 3565 3457 3457 -674 2783 .555 -100 3.455 9 5 0 1.373 663 208 42 58 184 200
7 1234 1201 -109 2968 -314 3341 3282 3282 -314 2968 .61 -100 1.342 0 0 0 1.431 794 208 42 58 201 217
8 1219 1191 -72 3046 -175 3304 3221 3221 -175 3046 .308 -100 1.632 0 0 0 .488 841 208 42 58 219 235
9 1230 1196 -45 3072 -120 3295 3192 3192 -120 3072 .188 -100 1.194 0 0 0 .282 800 202 42 58 238 254
10 1235 1183 -65 2994 -172 3292 3166 3166 -172 2994 .102 -100 1.157 0 0 0 .157 777 208 42 58 253 269
11 1180 1161 -25 3001 -91 3131 3092 3092 -91 3001 .228 -100 2.63 0 0 0 .366 787 208 42 58 271 287
12 1163 1151 -46 2892 -117 3062 3009 3009 -117 2892 .057 -100 1.032 0 0 0 .086 766 208 42 58 288 304
13 1152 1119 -30 2837 -82 3004 2919 2919 -82 2837 .204 -100 1.012 0 0 0 .291 767 208 42 58 305 321
14 1123 1101 -63 2724 -119 2918 2843 2843 -119 2724 .196 -100 1.203 0 0 0 .356 768 208 42 58 323 339
15 1108 1094 -36 2720 -81 2831 2801 2801 -81 2720 .265 -100 1.788 0 0 0 .469 741 208 42 58 340 356
16 1105 1085 -45 2663 -101 2808 2764 2764 -101 2663 .323 -100 1.869 0 0 0 .531 767 208 42 58 357 373
17 1099 1078 -33 2638 -96 2780 2734 2734 -96 2638 .219 -100 1.697 0 0 0 .361 768 208 42 58 375 391
18 1084 1064 -64 2537 -140 2733 2677 2677 -140 2537 .189 -100 2.041 0 0 0 .271 780 208 42 58 392 408
19 1071 1056 -53 2517 -122 2690 2639 2639 -122 2517 .134 -100 1.907 0 0 0 .197 834 208 42 58 409 425
20 1022 1010 -93 2314 -210 2556 2524 2524 -210 2314 .561 -100 2.256 0 0 0 1.076 828 208 42 58 427 443

Total number of rows: 8832

Table truncated, full table size 1021 Kbytes.




Supplementary data files not provided
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