|
| Status |
Public on Oct 03, 2012 |
| Title |
UW_DnaseSeq_ZhBTc4_E0_diffProtB_6hr_129/Ola |
| Sample type |
SRA |
| |
|
| Source name |
ZhBTc4
|
| Organism |
Mus musculus |
| Characteristics |
lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: ZhBTc4
cell organism: mouse
cell description: Undifferentiated mouse embryonic stem cells
cell sex: M
age: E0
age description: Embryonic day 0 (stem cell)
treatment: diffProtB_6hr
treatment description: Oct4 repression with Doxycycline in ZhBTc4 ES cell culture harvested at 6 hours. Doxycycline added to a final concentration of 100 ng/ml. (Stam)
strain: 129/Ola
strain description: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.
age: E0
age description: Embryonic day 0 (stem cell)
labexpid: DS15236,DS15860
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.
|
| Biomaterial provider |
Dr. Levasseur (University of Iowa)
|
| Treatment protocol |
diffProtB_6hr
|
| Growth protocol |
ZhBTc4_Stam_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
|
| |
|
| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
|
| |
|
| Submission date |
Oct 03, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9185 |
| Series (3) |
| GSE37074 |
DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE51341 |
Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence |
|
| Relations |
| SRA |
SRX191008 |
| BioSample |
SAMN01757918 |
| Named Annotation |
GSM1014150_mm9_wgEncodeUwDnaseZhbtc4129olaME0Diffb6hSigRep1.bigWig |
| Named Annotation |
GSM1014150_mm9_wgEncodeUwDnaseZhbtc4129olaME0Diffb6hSigRep2.bigWig |
