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Sample GSM1024484 Query DataSets for GSM1024484
Status Public on Dec 01, 2012
Title Adipose tissue_food removed_rep 5
Sample type RNA
 
Source name Epididymal adipose tissue, food removed, 6h
Organism Rattus norvegicus
Characteristics strain: Sprague-Dawley
gender: Male
age: 40 days
Extracted molecule total RNA
Extraction protocol Pieces of adipose tissue was put in RNAlater
Label Cy3
Label protocol Illumina TotalPrep RNA Amplification Kit was used
 
Hybridization protocol Performed according to Illumina protocol
Scan protocol Illumina Beadstation 500GX according to Illumina protocol
Description 4345006037_F
Data processing Illumina Genome Studio 3 was used. Cubic spline normalization, subtracted background.
 
Submission date Oct 23, 2012
Last update date Dec 01, 2012
Contact name Stefan K Nilsson
Organization name Umeå University
Street address Building 6M 3tr
City Umeå
ZIP/Postal code 90187
Country Sweden
 
Platform ID GPL6101
Series (1)
GSE41800 Rapid changes of gene expression in rat adipose tissue when food was removed

Data table header descriptions
ID_REF
VALUE cubic spline normalization, background subtracted
Detection Pval
Bead STDERR
Avg NBEADS

Data table
ID_REF VALUE Detection Pval Bead STDERR Avg NBEADS
ILMN_1370549 3440.685 0 110.1548 34
ILMN_1369537 86.95766 0 7.57434 42
ILMN_1358051 14.05267 0.06888069 5.234345 45
ILMN_1361746 7.86328 0.1857319 4.532476 45
ILMN_1352975 -2.365197 0.5362853 3.913172 36
ILMN_1368384 353.8841 0 13.75926 42
ILMN_1355285 24.33196 0.004920049 4.993586 36
ILMN_1376898 41.81635 0 4.175486 40
ILMN_1368325 101.8907 0 6.769427 60
ILMN_1353563 2392.405 0 79.52478 46
ILMN_1348794 -6.556462 0.7293973 3.202836 42
ILMN_1364273 22.26487 0.008610087 4.532411 37
ILMN_1369433 809.6962 0 30.34751 37
ILMN_1349007 249.2623 0 12.72285 46
ILMN_1374156 15.50023 0.05781058 5.166268 37
ILMN_1360232 435.1992 0 16.71928 51
ILMN_1355155 1435.848 0 67.07541 37
ILMN_1362563 56.76498 0 8.473565 46
ILMN_1355815 11.36705 0.1057811 3.906215 50
ILMN_1373215 96.54272 0 8.688784 36

Total number of rows: 22523

Table truncated, full table size 884 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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