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Sample GSM1024489 Query DataSets for GSM1024489
Status Public on Dec 01, 2012
Title Adipose tissue_ad lib_rep 4
Sample type RNA
 
Source name Epididymal adipose tissue, ad lib
Organism Rattus norvegicus
Characteristics strain: Sprague-Dawley
gender: Male
age: 40 days
Extracted molecule total RNA
Extraction protocol Pieces of adipose tissue was put in RNAlater
Label Cy3
Label protocol Illumina TotalPrep RNA Amplification Kit was used
 
Hybridization protocol Performed according to Illumina protocol
Scan protocol Illumina Beadstation 500GX according to Illumina protocol
Description 4345006037_J
Data processing Illumina Genome Studio 3 was used. Cubic spline normalization, subtracted background.
 
Submission date Oct 23, 2012
Last update date Dec 01, 2012
Contact name Stefan K Nilsson
Organization name Umeå University
Street address Building 6M 3tr
City Umeå
ZIP/Postal code 90187
Country Sweden
 
Platform ID GPL6101
Series (1)
GSE41800 Rapid changes of gene expression in rat adipose tissue when food was removed

Data table header descriptions
ID_REF
VALUE cubic spline normalization, background subtracted
Detection Pval
Bead STDERR
Avg NBEADS

Data table
ID_REF VALUE Detection Pval Bead STDERR Avg NBEADS
ILMN_1370549 2801.681 0 68.76563 48
ILMN_1369537 194.4582 0 18.32747 38
ILMN_1358051 -0.3784674 0.5394089 3.319554 39
ILMN_1361746 11.32585 0.182266 3.292023 38
ILMN_1352975 -13.82958 0.9630542 2.636023 41
ILMN_1368384 325.7142 0 20.92157 32
ILMN_1355285 26.07798 0.01108374 2.598356 30
ILMN_1376898 78.6694 0 10.38728 44
ILMN_1368325 47.64922 0 7.248905 43
ILMN_1353563 1065.584 0 36.16738 35
ILMN_1348794 -8.16346 0.843596 3.285078 35
ILMN_1364273 -0.4295857 0.5418719 3.166689 41
ILMN_1369433 527.0752 0 20.89774 49
ILMN_1349007 194.071 0 15.41895 50
ILMN_1374156 1.588757 0.4753695 3.209719 46
ILMN_1360232 155.2541 0 9.919787 50
ILMN_1355155 1359.313 0 57.41275 31
ILMN_1362563 52.86845 0 6.326407 43
ILMN_1355815 73.11694 0 8.660693 42
ILMN_1373215 23.97414 0.01847291 4.468501 43

Total number of rows: 22523

Table truncated, full table size 887 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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