|
| Status |
Public on Jan 31, 2013 |
| Title |
FFPE_normal prostate specimen_290 |
| Sample type |
RNA |
| |
|
| Source name |
normal (matched) prostate
|
| Organism |
Homo sapiens |
| Characteristics |
race: White
age: 65
gleason's grade: 7 (3+4)
|
| Treatment protocol |
Formalin-fixed paraffin-embedded (FFPE) normal prostate specimens
|
| Extracted molecule |
total RNA |
| Extraction protocol |
10 micron sections were deparaffinized and total RNA was isolated using the High Pure RNA Paraffin kit (Roche, Indianapolis, IN)
|
| Label |
cy3
|
| Label protocol |
cy3 labeling was done according to manufacturer's instructions
|
| |
|
| Hybridization protocol |
hybridization was done according to manufacturer's instructions
|
| Scan protocol |
Arrays were scanned using Illumina's BeadArray Reader Arrays were scanned using Illumina's BeadArray Reader
|
| Description |
SAMPLE_290
|
| Data processing |
Data were exported from Illumina’s Bead Studio software after performing the needed quality control checks and ddata were quantile normalized using the 'qn' function in the SRMA package in R.
|
| |
|
| Submission date |
Nov 01, 2012 |
| Last update date |
Jan 31, 2013 |
| Contact name |
Aliccia B Bollig-Fischer |
| E-mail(s) |
bollig@karmanos.org
|
| Organization name |
Karmanos Cancer Inst., Wayne State University
|
| Street address |
4100 John R, HWCRC rm 815
|
| City |
Detroit |
| State/province |
MI |
| ZIP/Postal code |
48201 |
| Country |
USA |
| |
|
| Platform ID |
GPL16230 |
| Series (2) |
| GSE41968 |
Genes associated with prostate cancer are differentially expressed in African American and European American men (matched normal specimens) |
| GSE41969 |
Genes associated with prostate cancer are differentially expressed in African American and European American men |
|
